两动物功能基因组学和脊椎动物基因调节的起源
Ferdinand Marlétaz1,2, Panos N Firbas3, Ignacio Maeso4
1Department of Zoology, University of Oxford, Oxford, UK.
Nature
|November 23, 2018
概括
这项研究揭示了脊椎动物的基因调控从一个更简单的状体状态演变,整个基因组的重复驱动了调控复杂性和专业化. 关键的基因表达模式在发育的早期得到保护.
科学领域:
- 进化基因组学
- 比较基因组学
- 发育生物学
背景情况:
- 脊椎动物拥有由两个全基因组重复形成的复杂基因组.
- 了解基因调节的演变对于识别脊椎动物的关键创新至关重要.
研究的目的:
- 通过对两动物基因组进行测序来研究带状动物基因组调节的演变.
- 为了比较两动物和脊椎动物之间的调节元素和基因表达.
主要方法:
- 布兰基奥斯托马兰西奥拉 (地中海) 的基因组测序.
- 对DNA甲基化,染色质可访问性和基因组修饰的表征.
- 跨发育阶段和成年组织的转录组分析.
主要成果:
- 确定了两动物和脊椎动物之间的增强器进化的中间阶段.
- 发现高基因表达和 cis 调节逻辑的保存,在胚胎基因类型期中达到峰值.
- 证明脊椎动物中超过80%的重复基因限制了表达,导致了专业化和监管复杂性的增加.
结论:
- Amphioxus提供了关于脊椎动物创新之前的监管格局的见解.
- 全基因组重复在脊椎动物基因调节和复杂性的演变中发挥了重要作用.
- 基因表达专业化,而不是子功能化,是脊椎动物重复基因的主要进化途径.
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