用单基分辨率对单链DNA进行尖端增强的拉曼成像
Zhe He1, Zehua Han1, Megan Kizer2
1Texas A&M University , College Station , Texas 77843 , United States.
Journal of the American Chemical Society
|December 28, 2018
概括
尖端增强拉曼散射 (TERS) 实现了单链DNA (ssDNA) 测序的亚纳米分辨率. 这种技术可以直接对各种纳米结构进行核酸测序和高分辨率成像.
科学领域:
- 纳米技术
- 光谱学
- 生物物理
背景情况:
- 尖端增强拉曼散射 (TERS) 在单个分子层面提供高分辨率的化学成像和传感.
- 使用银尖和金基板的间隙模式TERS已经显示出在1nm以下的结构的分解潜力.
研究的目的:
- 使用TERS用于直接核酸测序来证明亚纳米空间分辨率.
- 为分析单链DNA (ssDNA) 的结构和序列验证TERS.
主要方法:
- 使用TERS在黄金基板上的银尖直接测序菌体ssDNA (M13mp18).
- 沉积策略延伸ssDNA并暴露核基进行尖端相互作用.
- 在0.5nm间隔下沿着ssDNA扫描TERS尖端以收集光谱数据.
主要成果:
- 在SSDNA分析中达到1nm以下的空间分辨率.
- 成功展示了ssDNA配置的实时分析.
- 从生物聚合物的单体获得独特的TERS信号.
结论:
- TERS可以实现直接核酸测序的亚纳米分辨率.
- 该技术可用于各种纳米结构的高分辨率成像.
- 对于其他生物聚合物如RNA,多糖和多的直接测序,
相关概念视频
Single-Strand DNA Binding Proteins
16.7K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
16.7K
DNA Base Pairing
33.2K
Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,
33.2K
Fixing Double-strand Breaks
14.7K
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
14.7K
Lagging Strand Synthesis
61.3K
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
61.3K
DNA Helicases
24.1K
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
24.1K
DNA-only Transposons
17.4K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
The donor site from where the transposon is excised is either degraded or...
17.4K


