通过细胞遗传屏幕绘制基因调节的全基因组框架
Molly Gasperini1, Andrew J Hill1, José L McFaline-Figueroa1
1Department of Genome Sciences, University of Washington, Seattle, WA 98105, USA.
Cell
|January 8, 2019
概括
科学家使用一种基于CRISPR的新型系统绘制了数千个基因调节元件. 这种新方法将增强剂与它们的目标基因联系起来, 进步我们对人类基因组复杂的调控环境的理解.
科学领域:
- 基因组学
- 分子生物学
- 表观遗传学
背景情况:
- 人类基因组中的100多万个候选调节元素缺乏验证和明确的目标基因识别.
- 目前的人类遗传学方法受到常见变体和链接不平衡的限制,限制了监管要素分析的范围和解决方案.
研究的目的:
- 开发和验证一个高通量框架,用于在人类基因组中绘制增强剂基因对.
- 克服现有识别功能性监管要素及其目标的方法的局限性.
主要方法:
- 使用一种多重,表达量化特征位点 (eQTL) 启发的CRISPR/Cas9查框架.
- 在多个细胞中使用dCas9-KRAB来扰乱5920个候选增强剂.
- 对254,974个单细胞转录组进行了单细胞RNA测序 (RNA-seq),以测量扰动效应.
主要成果:
- 鉴定了664个cis增强基因对,其中470个被认为是高度可靠的.
- 确定的对显示了特定的转录因子和非家政基因状态的丰富.
- 结果显示了经过验证的增强剂-基因对之间的基因和3D形态接近.
结论:
- 开发的框架可以大规模地绘制增强剂-基因调控相互作用.
- 这种方法显著推进了人类基因组的 cis-regulatory 格局的描述.
- 这些发现为未来对基因调节及其在生物过程中的作用的研究提供了基础.
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