全球人类肠道微生物组的未培养基因组的新见解
Stephen Nayfach1,2, Zhou Jason Shi3,4, Rekha Seshadri5,6
1United States Department of Energy Joint Genome Institute, Walnut Creek, CA, USA. snayfach@lbl.gov.
Nature
|March 15, 2019
概括
研究人员从人类肠道基因组中重建了60,664个原生生物基因组草案,确定了2,058个新的物种级操作分类单元 (OTU). 这显著扩大了我们对肠道细菌多样性和疾病关联的理解.
科学领域:
- 微生物学
- 基因组学
- 生物信息学
背景情况:
- 由于培养的挑战,许多人类肠道微生物的物种仍未被测序.
- 现有的基因组数据只是微生物多样性的一小部分.
研究的目的:
- 为了重建未培养的人类肠道细胞的基因组草案.
- 扩大已知的肠道微生物的遗传多样性.
- 识别新物种及其在健康和疾病中的潜在作用.
主要方法:
- 从3,810个人类便基因组中重建了60,664个初始细胞基因组.
- 确定了2,058个新的物种级操作分类单位 (OTU).
- 临床肠道微生物组研究的元分析以确定疾病关联.
主要成果:
- 肠道细菌的基因多样性增加了50%.
- 新发现的OTU在农村人口中普遍存在.
- 针对新型的OTU确定了许多疾病关联,从而增强了预测模型.
- 分析发现未培养物种的基因组减少, 生物合成途径丢失.
结论:
- 这项研究显著扩大了人类肠道微生物组的基因组参考目录.
- 新发现的微生物物种为了解肠道健康和疾病提供了新的目标.
- 对基因组缩小的洞察力可能会指导未培养微生物的未来培养策略.
相关概念视频
Genomics
40.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
40.3K
Global Climate Change
28.9K
Throughout its ~4.5 billion year history, the Earth has experienced periods of warming and cooling. However, the current drastic increase in global temperatures is well outside of the Earth’s cyclic norms, and evidence for human-caused global climate change is compelling. Paleoclimatology, the study of ancient climate conditions, provides ample evidence for human-caused global climate change by comparing recent conditions with those in the past.
28.9K
Genome Size and the Evolution of New Genes
9.1K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
9.1K
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes
15.9K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
15.9K
Genomic Imprinting and Inheritance
37.1K
Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
37.1K
Introduction to Global Positioning System
505
The Global Positioning System (GPS) revolutionized positioning on Earth, providing precise location data through satellite ranging. The GPS system was developed in 1978 by the U.S. Department of Defense for military use, and it became available for civilian applications in 1983, transforming fields including navigation, fleet management, and time synchronization for telecommunications systems.GPS consists of satellites in medium Earth orbit, about 20,200 kilometers above the surface,...
505


