相关实验视频
Updated: Jan 25, 2026

10:01
In vitro Methylation Assay to Study Protein Arginine Methylation
Published on: October 5, 2014
15.8K
素甲基化SET7/9的基质分化的过渡状态
Shi Chen, Kanishk Kapilashrami, Chamara Senevirathne
1Department of Biochemistry , Albert Einstein College of Medicine , Bronx , New York 10461 , United States.
Journal of the American Chemical Society
|April 30, 2019
概括
酶可以稳定多个过渡状态 (TSs) 进行有效的催化. SET7/9酶使用两个不同的TS来甲基化不同的基质,这对于理解酶的多功能性至关重要.
科学领域:
- 生物化学
- 酵素学
- 结构生物学
背景情况:
- 酶反应依赖于过渡状态 (TS) 稳定以加速速度.
- 了解酶是否可以稳定单个反应的多个TS仍然是一个重大挑战.
- 蛋白质氨基转移酶 (PKMTs) 是参与表观遗传调节的关键酶.
研究的目的:
- 调查PKMT SET7/9是否可以容纳和使用多个不同的过渡状态.
- 阐明SET7/9的基板依赖TS稳定性的结构和机制基础.
- 探索多个TS对酶效率和基质杂乱性的影响.
主要方法:
- 使用实验性动态同位素效应来探测反应机制.
- 使用计算方法来确定和限制过渡状态结构.
- 专注于SET7/9酶及其生理基质H3和p53的复合体.
主要成果:
- 证明SET7/9采用两个结构上不同的过渡状态来甲基化H3K4和p53K372.
- 这些TS分别是近乎对称的SN2和极其早期的SN2.
- 观察到这些SET7/9 TS与其他PKMT报告的不同.
结论:
- 通过利用多个过渡状态来催化甲基化,SET7/9表现出了显著的灵活性.
- 这种多TS策略可能对SET7/9的广泛基质特异性和高催化效率至关重要.
- 这些发现表明多重TS稳定可能是其他PKMT和酶的常见机制.
相关概念视频
Phase Transitions
22.8K
Whether solid, liquid, or gas, a substance's state depends on the order and arrangement of its particles (atoms, molecules, or ions). Particles in the solid pack closely together, generally in a pattern. The particles vibrate about their fixed positions but do not move or squeeze past their neighbors. In liquids, although the particles are closely spaced, they are randomly arranged. The position of the particles are not fixed—that is, they are free to move past their neighbors to...
22.8K
Properties of Transition Metals
29.7K
Transition metals are defined as those elements that have partially filled d orbitals. As shown in Figure 1, the d-block elements in groups 3–12 are transition elements. The f-block elements, also called inner transition metals (the lanthanides and actinides), also meet this criterion because the d orbital is partially occupied before the f orbitals.
29.7K
Cooperative Allosteric Transitions
8.7K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
8.7K
Phase Transitions: Vaporization and Condensation
20.8K
The physical form of a substance changes on changing its temperature. For example, raising the temperature of a liquid causes the liquid to vaporize (convert into vapor). The process is called vaporization—a surface phenomenon. Vaporization occurs when the thermal motion of the molecules overcome the intermolecular forces, and the molecules (at the surface) escape into the gaseous state. When a liquid vaporizes in a closed container, gas molecules cannot escape. As these gas phase molecules...
20.8K
Phase Transitions: Sublimation and Deposition
19.9K
Some solids can transition directly into the gaseous state, bypassing the liquid state, via a process known as sublimation. At room temperature and standard pressure, a piece of dry ice (solid CO2) sublimes, appearing to gradually disappear without ever forming any liquid. Snow and ice sublimate at temperatures below the melting point of water, a slow process that may be accelerated by winds and the reduced atmospheric pressures at high altitudes. When solid iodine is warmed, the solid sublimes...
19.9K
Phase Transitions: Melting and Freezing
14.8K
Heating a crystalline solid increases the average energy of its atoms, molecules, or ions, and the solid gets hotter. At some point, the added energy becomes large enough to partially overcome the forces holding the molecules or ions of the solid in their fixed positions, and the solid begins the process of transitioning to the liquid state or melting. At this point, the temperature of the solid stops rising, despite the continual input of heat, and it remains constant until all of the solid is...
14.8K

