Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

RNA Structure01:23

RNA Structure

78.6K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
78.6K
RNA Structure01:19

RNA Structure

6.7K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
6.7K
Leaky Scanning02:28

Leaky Scanning

5.6K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.6K
Types of RNA01:20

Types of RNA

8.7K
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
8.7K
RNA Stability01:53

RNA Stability

35.5K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.5K
Conserved Binding Sites01:49

Conserved Binding Sites

5.0K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
5.0K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

The protein binding domains of staphylococcal protein A fold independently and form an N- to C-terminal gradient of increasing stability.

bioRxiv : the preprint server for biology·2026
Same author

Assessing the contribution of rare DNA states to cancer mutational signatures using sequence-specific conformational fingerprinting.

Nature communications·2026
Same author

Thermodynamic prediction of RNA cellular activity from sequence via conformational ensembles.

Cell·2026
Same author

The effect of osmolytes on peptide helicity: Experiments and predictions.

Protein science : a publication of the Protein Society·2026
Same author

Revealing hidden protonated conformational states in RNA dynamic ensembles.

Nucleic acids research·2025
Same author

Predicting pose distribution of protein domains connected by flexible linkers is an unsolved problem.

bioRxiv : the preprint server for biology·2025

相关实验视频

Updated: Jan 2, 2026

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

5.6K

暴露隐藏的高 afinity RNA 构成状态

Nicole I Orlovsky1, Hashim M Al-Hashimi1,2, Terrence G Oas1,2

  • 1Department of Biochemistry , Duke University Medical Center , Durham , North Carolina 27710 , United States.

Journal of the American Chemical Society
|December 10, 2019
PubMed
概括

了解RNA结合亲和力需要考虑构造性惩罚. 这项研究表明,即使是整体弱的RNA-连接体结合,也可能涉及到对特定的预折叠RNA状态的强结合,从而影响药物发现.

科学领域:

  • 生物化学
  • 结构生物学
  • 分子生物物理学

背景情况:

  • RNA结合亲和力受形态变化和相关的能量成本的影响,称为"形态惩罚".
  • 测量这些惩罚是具有挑战性的,因为结合的RNA结构通常在未结合状态下具有不可检测的群体.

研究的目的:

  • 为结合的RNA结构变化和连接物结合开发热力学模型.
  • 在HIV-1 TAR RNA-阿尔金胺 (ARG) 相互作用模型系统中量化构造性处罚.

主要方法:

  • 使用核磁共振 (NMR) 化学转移扰动和放松分散.
  • 应用贝叶斯推理对12个状态模型来估计低人口状态的能量.
  • 研究了HIV-1 TAR RNA与阿尔基尼胺 (ARG) 作为Tat蛋白模仿物的相互作用.

主要成果:

  • 根据 TAR 形状和 ARG 占用率,确定了至少四种不同的 RNA 中介物.
  • 发现具有两个ARG连接体的主导绑定 TAR 构造具有未绑定的低于检测极限平衡群体.
  • 证明ARG结合了预折叠的TAR形状,具有纳米分子亲和力,尽管整体亲和力明显较弱 (0.2mM).

结论:

更多相关视频

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

5.0K
An Assay for Quantifying Protein-RNA Binding in Bacteria
07:02

An Assay for Quantifying Protein-RNA Binding in Bacteria

Published on: June 12, 2019

6.9K

相关实验视频

Last Updated: Jan 2, 2026

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

5.6K
Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

5.0K
An Assay for Quantifying Protein-RNA Binding in Bacteria
07:02

An Assay for Quantifying Protein-RNA Binding in Bacteria

Published on: June 12, 2019

6.9K
  • 符合性处罚显著决定了RNA-连接体结合性,并可以推动结合性合作性.
  • 准确预测RNA识别需要考虑构造转换的能量成本.
  • 这些发现对RNA向药物发现和RNA蛋白相互作用的理解有意义.