在17,795个人类基因组中绘制和描述结构变异
Haley J Abel1,2, David E Larson1,2, Allison A Regier1,3
1McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO, USA.
Nature
|May 28, 2020
概括
研究人员在近18000个人类基因组中绘制了结构变异, 这项研究揭示了结构变异对人类遗传学和疾病的重大影响,特别是非编码删除.
科学领域:
- 基因组学
- 人类遗传学
- 生物信息学
背景情况:
- 全基因组测序旨在识别所有遗传变异,但结构变异 (SV) 的工具落后于较小变异的工具.
- 结构变异与单核酸变异和indels不同,难以全面检测和表征.
- 了解SV对于人类遗传多样性和疾病关联的完整画面至关重要.
研究的目的:
- 在一个大群深度测序的人类基因组中绘制和描述结构变异.
- 创建迄今为止最大的基于全基因组测序的结构变异资源.
- 评估人类基因组中的结构变异的频率,影响和影响.
主要方法:
- 使用可扩展的计算管道分析了17795个深度测序的人类基因组.
- 绘制和描述各种类型的结构变体,包括删除,重复,反转和转移.
- 对已识别的结构变体公开的场所频率数据.
主要成果:
- 建立了最大的基于全基因组测序的结构变异资源,包括158,991个极为罕见的SV.
- 发现个体平均携带2.9个罕见的编码改变SV, 影响4.2个基因.
- 估计SV占全基因组罕见基因的17.2%,主要来自非编码删除.
结论:
- 结构变异是罕见基因变异的重要来源,具有显著的功能影响,与功能丧失等位基因相美.
- 开发的资源和发现将有助于分析和解释人类遗传学研究中的结构变异.
- 在全基因组测序时代,进一步研究遗传病和人类进化是必要的.
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