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相关概念视频

Catalytically Perfect Enzymes01:07

Catalytically Perfect Enzymes

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The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
 
Most enzymes...
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Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

10.2K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
10.2K
Induced-fit Model01:13

Induced-fit Model

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Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical...
87.4K
Enzymes02:34

Enzymes

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Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
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Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

6.3K
Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
6.3K
Introduction to Enzyme Kinetics01:19

Introduction to Enzyme Kinetics

30.5K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
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Modeling an Enzyme Active Site using Molecular Visualization Freeware
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一种基于进化论的模型,用于设计胆酸突变酶

William P Russ1, Matteo Figliuzzi2, Christian Stocker3

  • 1University of Texas Southwestern Medical Center, Dallas, TX, USA.

Science (New York, N.Y.)
|July 25, 2020
PubMed
概括

科学家们利用进化数据开发了一种设计新型蛋白质的方法. 这种方法可以创建具有自然功能和大量序列多样性的酶,为人工蛋白质设计铺平了道路.

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科学领域:

  • 生物化学
  • 蛋白质工程
  • 计算生物学

背景情况:

  • 酶的合理设计对于基础研究和实际应用至关重要.
  • 现有的方法常常与蛋白质序列功能关系的复杂性作斗争.

研究的目的:

  • 开发一种基于进化的人工蛋白质设计的一般过程.
  • 直接从进化序列数据中学习蛋白质规范的约束.

主要方法:

  • 从进化数据中学习蛋白质序列的限制.
  • 设计和合成合成基因库.
  • 在体内测试基因库,使用定量补充测试.
  • 将该过程应用于芳香氨基酸生物合成中的酶化酶.

主要成果:

  • 证明了与自然相似的催化功能的设计,具有可里斯马特突变酶的大量序列多样性.
  • 表明基于序列的统计模型可以指定功能性蛋白质.
  • 在特定的基因组背景下优化生成模型.
  • 证实了大量功能蛋白序列的使用.

结论:

  • 进化序列数据足以确定蛋白质.
  • 开发的过程为一般的人工蛋白质设计提供了基础.
  • 这项工作为设计具有理想功能的蛋白质开辟了新的途径.