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人类和小鼠基因组中的DNA元素的扩展百科全书
, Jill E Moore1, Michael J Purcaro1
1University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA.
Nature
|July 31, 2020
概括
"DNA元素百科全书" (ENCODE) 项目绘制了人类和老鼠的基因组图,确定了数百万个调节元素. 这种资源增强了对基因组组织和功能的理解.
科学领域:
- 基因组学
- 表观遗传学
- 分子生物学
背景情况:
- 人类和老鼠的基因组编码RNA和蛋白质,调节它们的产生.
- 了解基因组调节对于破译生物过程至关重要.
研究的目的:
- 扩展DNA元素百科全书 (ENCODE) 项目的基因组特征分析.
- 在人类和小鼠基因组中创建一个全面的cis-regulatory元素注册表.
主要方法:
- 收集了5992个关于RNA转录,染色质结构,DNA甲基化和蛋白质占用量的新实验数据集.
- 整合选定的数据类型以确定候选的cis-regulatory元素.
- 开发了用于用户定义的基因组数据的SCREEN网络服务器.
主要成果:
- 鉴定了926535种人类和339815种小鼠候选体调节元素.
- 这些元素占它们各自基因组的7.9% (人类) 和3.4% (老鼠).
- 在小鼠胎儿发育过程中生成系统数据.
结论:
- ENCODE数据门户和SCREEN资源提供了广泛的基因组信息.
- 这种资源有助于科学界了解基因组的组织和功能.
- 有助于更深入地了解人类和小鼠的基因调节.
相关概念视频
Genomic DNA in Eukaryotes
Eukaryotes have large genomes compared to prokaryotes. To fit their genomes into a cell, eukaryotic DNA is packaged extraordinarily tightly inside the nucleus. To achieve this, DNA is tightly wound around proteins called histones, which are packaged into nucleosomes that are joined by linker DNA and coil into chromatin fibers. Additional fibrous proteins further compact the chromatin, which is recognizable as chromosomes during certain phases of cell division.
Genomics
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Evolutionary Relationships through Genome Comparisons
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Genome Size and the Evolution of New Genes
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.

