在基因组尺度上测量DNA机制
Aakash Basu1,2, Dmitriy G Bobrovnikov1, Zan Qureshi3
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Nature
|December 17, 2020
概括
科学家开发了循环测量DNA曲的方法, 这种代码影响基因调节,核细胞定位和染色体重塑活性,影响细胞功能.
科学领域:
- 分子生物学
- 基因组学
- 生物物理
背景情况:
- DNA的机械特性,如曲,对于细胞功能至关重要,但很难在规模上测量.
- 了解DNA机制是解密染色体交易和全基因组调节的关键.
研究的目的:
- 为测量DNA循环倾向和内在循环能力开发高通量试验 (循环测量).
- 在大型基因组尺度上绘制DNA机制并识别序列编码的机械性质.
主要方法:
- 开发了一种"循环测量",用于量化DNA循环的倾向.
- 从Saccharomyces cerevisiae染色体V,其他基因组区域和随机序列分析了270,806个50bp的DNA片段.
- 与核细胞定位,染色体重塑活性和转录起点相关的DNA机制.
主要成果:
- 在转录起点 (TSS) 上游的低DNA曲性的已识别的序列编码区域.
- 证明链接器DNA的低曲性抑制了INO80染色体重塑器的核细胞滑动.
- 核体中显现出不同的DNA可曲性模式 (高于二极体,低于链接体),受编码子选择的影响,影响转录.
结论:
- 一个基因组规模的DNA机制图揭示了影响基本生物过程的"机械代码".
- DNA 机械在定义核细胞缺少区域和调节基因表达方面发挥着重要作用.
- 代选择的进化可能是由核体内的DNA的机械性质所塑造的.
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