二激活酶用于中心代谢反应的催化
Patrick L Fernandez1, Richard W Nagorski2, Judith R Cristobal1
1Department of Chemistry, University at Buffalo, SUNY, Buffalo, New York 14260-3000, United States.
Journal of the American Chemical Society
|February 9, 2021
概括
酶激活通过二结合增强,使激活障碍降低11- 13kcal/mol. 这种在六种糖解酶中观察到的机制涉及有效的基质结合和催化结构的变化.
科学领域:
- 生物化学
- 酵素学
- 结构生物学
背景情况:
- 酶催化通常涉及与基质功能组的相互作用.
- 化基质在像糖解这样的代谢途径中很常见.
- 了解酶激活机制对于代谢途径分析至关重要.
研究的目的:
- 调查二结合在酶激活中的作用.
- 识别利用基质二结合能进行激活的酶.
- 在蛋白质组中探索这种催化基因的普遍性.
主要方法:
- 酶催化反应的动态分析 (kcat/Km).
- 激活障碍的确定 (ΔG‡).
- 在过渡状态下对基质结合能量的比较.
- 酶形状变化的记录.
主要成果:
- 三种脱酶和异构酶的激活障碍因二相互作用而降低了11 - 13千卡/mol.
- 离子结合能量为切断基质的过渡状态稳定提供4-6kcal/mol.
- 鉴定出六种使用基质二结合能激活的糖解酶集群.
- 在其中五种酶中观察到由dianion驱动的结构变化.
结论:
- 基离子结合是激活特定的糖解酶的关键机制.
- 这种催化动机涉及形状变化,在蛋白质组中似乎很普遍.
- 通过离子结合能量激活酶对代谢途径的效率有显著的贡献.
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