来自NHLBI TOPMed计划的53831个不同基因组的测序
Daniel Taliun1,2, Daniel N Harris3,4,5, Michael D Kessler3,4,5
1Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, MI, USA.
Nature
|February 11, 2021
概括
精确医学转基因 (TOPMed) 项目从全基因组测序中发现了超过4亿种基因变异,其中包括许多罕见的基因变异. 这种丰富的数据集增强了对疾病遗传贡献的理解,并改善了全基因组关联研究.
科学领域:
- 基因组学
- 精准医学
- 人类遗传学
背景情况:
- 转基因精准医学 (TOPMed) 计划旨在了解心脏,肺,血液和睡眠障碍的遗传基础.
- 最初的阶段涉及到各种个体的全基因组测序以及详细的表型数据.
研究的目的:
- 描述TOPMed计划的目标,设计,资源和初步发现.
- 利用基因组和表型数据改善疾病的诊断,治疗和预防.
主要方法:
- 全基因组测序超过53000个个体.
- 变种呼叫,包括通过专业分析检测新变种.
- 在基因型和表型数据库 (dbGaP) 中存储数据.
主要成果:
- 识别了超过4亿个单核酸和插入/删除变体.
- 发现97%的变异频率低于1%,其中46%为单元.
- 提供人类进化和疾病的洞察力.
结论:
- TOPMed数据集为研究罕见和非编码变异对表型变异的影响提供了全面的资源.
- 将TOPMed单元类型与归算方法相结合,可以提高全基因组关联研究的效力.
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