蛋白酸酶中的循环动力学和酶催化
Rory M Crean1, Michal Biler1, Marc W van der Kamp2
1Science for Life Laboratory, Department of Chemistry - BMC, Uppsala University, Box 576, S-751 23 Uppsala, Sweden.
Journal of the American Chemical Society
|March 4, 2021
概括
计算研究揭示了蛋白质氨酸酸酶 (PTP) 循环动态,特别是WPD循环,如何影响酶催化率. PTP1B和YopH WPD循环运动的差异解释了它们的各种催化活动和异质通信.
科学领域:
- 生物化学和分子生物学
- 酵素学
- 结构生物学
背景情况:
- 蛋白质氨酸酸酶 (PTPs) 在细胞信号传递中起着至关重要的作用,
- 尽管具有相似的催化机制,但催化速率在PTP之间有显著差异.
- 假设WPD循环动力学可以控制这些速率差异.
研究的目的:
- 以计算方式研究人类PTP1B和Yersinia pestis YopH的WPD循环动力学和催化机制.
- 确定它们的催化速率大小差异的结构决定因素.
主要方法:
- 详细的结构分析.
- 传统和增强的采样分子动力学模拟的WPD循环动力学.
- 用于催化步骤的实证价值键模拟.
主要成果:
- 确定了控制WPD循环动态和催化速率的关键残留物和结构特征.
- 在这些酶中阐明了全沟通通路径.
- 在野生型YopH中观察到一种罕见的,具有催化能力不足的超开放式WPD循环形态.
结论:
- 在WPD循环和邻近循环结构的差异调节PTP动态和催化活性.
- 这些发现提供了关于PTP如何调节活动以应对环境变化的见解.
- 这项研究为了解PTP酶家族调节提供了机制基础.
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