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鼠标小脑细胞中cis调节元件的发育和进化动态
Ioannis Sarropoulos1, Mari Sepp1, Robert Frömel2
1Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, D-69120 Heidelberg, Germany. h.kaessmann@zmbh.uni-heidelberg.de s.pfister@dkfz.de i.sarropoulos@zmbh.uni-heidelberg.de m.sepp@zmbh.uni-heidelberg.de.
Science (New York, N.Y.)
|August 27, 2021
在PubMed 上查看摘要
概括
这项研究使用单核测定来绘制小鼠大脑发育的图表,用于通过测序 (snATAC-seq) 检测可访问的染色体. 它揭示了小脑细胞中的动态基因调节和进化保护模式.
科学领域:
- 基因组学
- 发育生物学
- 神经科学
背景情况:
- 器官的发育依赖于复杂的基因调节网络.
- 了解小脑发育对于神经科学来说至关重要.
- 之前的研究还没有完全阐明小脑发育过程中的调节动态.
研究的目的:
- 通过多个阶段调查小鼠大脑发育的调节基础.
- 在正在发育的小脑中识别细胞类型和候选 cis 调节元件 (CREs).
- 探索小脑细胞中的调节元件的进化保存.
主要方法:
- 通过测序 (snATAC-seq) 对11个发育阶段的约90,000个细胞进行单核测定.
- 绘制的小脑细胞类型和确定的候选CREs.
- 将基因组数据与脊椎动物基因组和鱼大脑snATAC-seq数据进行比较.
主要成果:
- 在原生细胞中检测到显著的时空异质性.
- 在分化小脑神经元的调节程序中观察到逐渐的分歧.
- 在小鼠和鱼的发育和分化过程中发现了CRE保存的共同下降,细胞类型的限制差异.
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