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Comparing Copy Number Variations and SNPs02:26

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Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
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A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
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The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
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Genetic Variation

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Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
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Epistasis

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In addition to multiple alleles at the same locus influencing traits, numerous genes or alleles at different locations may interact and influence phenotypes in a phenomenon called epistasis. For example, rabbit fur can be black or brown depending on whether the animal is homozygous dominant or heterozygous at a TYRP1 locus. However, if the rabbit is also homozygous recessive at a locus on the tyrosinase gene (TYR), it will have an unshaded coat that appears white, regardless of its TYRP1...
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  2. 蛋白质编码的重复多态性强烈影响着人类的多样性
  1. 首页
  2. 蛋白质编码的重复多态性强烈影响着人类的多样性

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蛋白质编码的重复多态性强烈影响着人类的多样性

Ronen E Mukamel1,2, Robert E Handsaker2,3,4, Maxwell A Sherman1,2,5

  • 1Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.

Science (New York, N.Y.)
|September 23, 2021

在PubMed 上查看摘要

概括
此摘要是机器生成的。

研究人员开发了新的方法来分析人类DNA中的变量重复数 (VNTR). 这项研究揭示了这些遗传变异与各种人类特征,包括身高和头发形态之间的重要联系.

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科学领域:

  • 遗传学
  • 人类生物学
  • 生物信息学

背景情况:

  • 许多人体蛋白质具有具有可变大小或复制数的域,这是由于蛋白质编码异构体中的可变数量 (VNTR) 的原因.
  • 由于精确测量这些重复性遗传元素的挑战,VNTRs的表型影响仍然在很大程度上未被探索.

研究的目的:

  • 开发新的计算方法,以从全外体测序 (WES) 数据中估计VNTR长度.
  • 为了大规模的遗传关联研究,将VNTR基因归因为单核酸多态 (SNP) 类型.
  • 研究常见的VNTR与广泛的人类表型之间的关联.

主要方法:

  • 从WES数据直接推断VNTR长度的算法开发.
  • 实施归算技术,将VNTR数据与现有的SNP单元型信息整合起来.
  • 全基因组关联研究 (GWAS) 分析了英国生物库队列中的786种表型中的118种改变蛋白质的VNTR (n=415,280).

主要成果:

  • 确定常见的VNTR与众多人类表型之间的强烈关联,包括身高,头发形态和各种健康生物标志物.
  • 发现了一些迄今为止与人类特征共同的遗传变异最重要的关联.
  • 证明结合大效应的VNTR可以改善基因内特定蛋白质编码突变的关联.

结论:

  • VNTRs是影响人类表型的重要,但以前被低估的遗传变异来源.
  • 开发的方法可以对VNTR进行系统研究,揭示它们在人类健康和疾病中的作用.
  • 这些发现强调了在分子和表型分析中考虑高度多态结构变异的重要性.