基质序列控制Lanthionine形成的区域选择性
Tung Le1, Kevin Jeanne Dit Fouque2, Miguel Santos-Fernandez2
1Department of Chemistry and Howard Hughes Medical Institute, University of Illinois at Urbana-Champaign, 600 S. Mathews Avenue, Urbana, Illinois 61801, United States.
Journal of the American Chemical Society
|November 1, 2021
概括
菌使用单个酶从许多前体中产生多种. 基质序列,而不是酶,决定了兰因交联模式,有助于未来的预测模型.
科学领域:
- 生物化学
- 分子生物学
- 合成生物学
背景情况:
- 兰西是对稳定性和生物活性至关重要的核糖体合成和转化后修饰 (RiPP).
- 菌表现出独特的组合生物合成,使用单一的氨酸合成酶从多种先驱中产生众多的氨酸.
- 单个酶控制多种基质循环的机制尚不清楚.
研究的目的:
- 调查蓝藻生物合成中兰交联区域选择性的因素.
- 评估捕获的离子移动性光谱法-并联质谱法 (TIMS-MS/MS) 用于分离 lanthipeptide 异构体.
- 建立从组合生物合成中预测兰氏环模式的基础.
主要方法:
- 使用ProcA3.3前体变体库.
- 采用被困离子移动性光谱-并联质谱 (TIMS-MS/MS) 进行异构体分离.
- 分析了基质序列和酶活性 (ProcM).
主要成果:
- 基质序列,而不是ProcM酶,决定了兰西形成的区域选择性.
- TIMS-MS/MS有效地分离了兰氏的组成异构体,性能优于传统的液体染色学.
- 识别了循环化结果的关键因素,但没有发现所有序列的简单预测规则.
结论:
- 菌的兰氏循环主要依赖基质.
- TIMS-MS/MS是分析复杂的兰氏混合物的有价值的工具.
- 未来的深度学习模型可以开发用于预测组合生物合成中的兰氏环模式.
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