一个共同的NCBI和EMBL-EBI转录集用于临床基因组学和研究
Joannella Morales1, Shashikant Pujar2, Jane E Loveland1
1European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK.
Nature
|April 7, 2022
概括
通过NCBI和EMBL-EBI (MANE) 的合作,建立了标准化的人类基因和转录注释集. 这些MANE转录确保了一致的临床变异报告和基因组浏览器显示.
科学领域:
- 基因组学
- 生物信息学
- 临床遗传学
背景情况:
- 基因组注释对于理解临床相关变异至关重要.
- 缺乏标准化的临床报告和浏览器显示阻碍了一致的解释.
- 为了应对这些挑战,Ensembl/GENCODE和RefSeq数据库进行了合作.
研究的目的:
- 描述NCBI和EMBL-EBI (MANE) 转录集中的匹配注释.
- 建立变种报告和基因组浏览器显示的通用标准.
- 提高基因变异的一致性和简化临床解释.
主要方法:
- 在MANE合作中,Ensembl/GENCODE和RefSeq汇聚了人类基因和转录注释.
- 定义了一组高值的转录和相应的蛋白质.
- 创建了MANE Select和MANE Plus临床成绩单集.
主要成果:
- 包括ACMG二次发现基因在内的97%的人类蛋白质编码基因的释放MANE选择转录.
- MANE转录确保了Ensembl/GENCODE和RefSeq异构序列之间的准确匹配.
- 通过主要的基因组浏览器和关键资源访问MANE转录.
结论:
- MANE转录集提供了变异报告和基因组浏览器显示的通用标准.
- 广泛采用将提高报告的一致性和数据交换.
- 简化了基因变异的临床解释.
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