人类的反复逆变多态与遗传不稳定性和基因组疾病有关
David Porubsky1, Wolfram Höps2, Hufsah Ashraf3
1Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Cell
|May 7, 2022
概括
我们发现了729种人类的逆转, 经常发生的反转,通常接近细分重复,导致基因组疾病和突变率的增加.
科学领域:
- 基因组学
- 人类遗传学
- 分子生物学
背景情况:
- 与副本数变异 (CNV) 相比,逆转是一种研究不足的遗传变异类.
- 了解逆转形成及其影响对于人类遗传学研究至关重要.
研究的目的:
- 为了全面识别和描述人类基因组中的反转.
- 调查反转形成的机制,特别是反复反转.
- 探索逆转,细分重复和基因组疾病之间的关联.
主要方法:
- 整合多种基因组技术用于反向检测.
- 生物信息分析以描述反向的大小,类型和侧面序列.
- 开发用于识别反复反转形成的方法.
主要成果:
- 在41个人类基因组中发现了729个反转.
- 小 (<2 kbp) 和大反转的形成机制的表征.
- 确定了40个反复发生的反转,形成率高,性染色体偏差.
- 观察到72%的平衡反转与细分重复 (SD) 或逆转移相伴.
- 经常发生的逆转与基因组乱的关键区域共同定位.
结论:
- 在人类基因组变异和疾病中, 反转,特别是反复的反转, 起着重要作用.
- 像SDs这样的侧重重复可以促进反复的反转形成.
- 逆转复发有助于遗传多样性,可变性和对某些遗传疾病的倾向.
相关概念视频
Non-LTR Retrotransposons
12.0K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
12.0K
Genomic Imprinting and Inheritance
35.4K
Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
35.4K
Exon Recombination
3.7K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.7K
Single Nucleotide Polymorphisms-SNPs
16.1K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
16.1K
Mismatch Repair
5.3K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
5.3K
Comparing Copy Number Variations and SNPs
18.0K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
18.0K


