在生理盐条件下,DNA曲力促进Z-DNA形成
Jaehun Yi1, Sanghun Yeou1, Nam Ki Lee1
1Department of Chemistry, Seoul National University, Seoul 08826, Republic of Korea.
Journal of the American Chemical Society
|July 15, 2022
概括
没有研究过的DNA曲, 积极促进Z-DNA的形成. 较强的曲力导致更多的Z-DNA,即使在较低的盐度,揭示了DNA结构调节的新机制.
科学领域:
- 分子生物学
- 生物物理
- 遗传学
背景情况:
- Z-DNA是一种非正规的DNA结构, 对于转录等生物过程至关重要.
- 已知扭曲和拉伸等机械力量会诱导Z-DNA的形成.
- 基因曲折对Z-DNA形成的影响仍然未被探索.
研究的目的:
- 研究DNA曲对Z-DNA的形成的影响.
- 量化曲力与Z-DNA诱导之间的关系.
- 阐明曲诱导的B-Z转换的分子机制.
主要方法:
- 利用D形DNA纳米结构对双链DNA (dsDNA) 施加可控的曲力.
- 使用单分子光共振能量转移 (smFRET) 来观察B-ZDNA转换.
- 进行蒙特卡洛模拟以建模DNA结构变化.
主要成果:
- 表明DNA曲会诱导Z-DNA的形成,而增加的Z-DNA形成与更强的曲力相关.
- 在曲应力下,离子 (Mg2+) 度显著降低时发生了B-Z转变.
- 对于甲基化DNA,曲使B-Z过渡的Mg2+度降低了28倍.
- 模拟表明B-Z接口形成与基层挤出减轻曲应力.
结论:
- DNA 曲是 B-Z DNA 转换的一个重要促进因素.
- 在生理盐条件下,曲诱导的Z-DNA形成可能发生.
- 这一发现为基因表达的DNA机械调节提供了新的见解.
相关概念视频
Single-Strand DNA Binding Proteins
14.8K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
14.8K
DNA as a Genetic Template
22.6K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
22.6K
The DNA Helix
141.2K
Overview
141.2K
The Nucleosome
16.6K
DNA in a human cell is almost 2m long and it is packed inside a tiny nucleus that is only a few microns in diameter. The level of compaction of DNA inside the nucleus is astonishing. It is organized into several sequentially higher levels of compaction to fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
16.6K
DNA Topoisomerases
31.8K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
31.8K
Fixing Double-strand Breaks
12.8K
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...
12.8K


