在非核糖体生物合成中脱水凝结域的结构和功能
Jon B Patteson1, Camille Marie Fortinez2, Andrew T Putz1
1Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.
Journal of the American Chemical Society
|July 27, 2022
概括
这项研究表明,凝结域 (CmodAA) 是天然产品中脱氨基酸生物合成的关键. 了解它们的脱水功能有助于发现新的化合物和工程.
科学领域:
- 生物化学
- 分子生物学
- 自然产品生物合成
背景情况:
- 脱氨基酸在生物活性天然产品中至关重要,但它们在非核糖体中的生物合成尚不清楚.
- 非核糖体是一种具有显著药用潜力的多样性自然产品.
研究的目的:
- 阐明凝结域 (CmodAA) 在脱氨基酸形成中的作用.
- 研究非核糖体合成酶AmbE中的CmodAA域的结构和功能.
- 了解非核糖体中的脱氨基酸生物合成机制.
主要方法:
- 对基质的CmodAA域活性进行生物化学测试.
- 生物信息分析以确定保存的残留物和域.
- 用X射线结晶学来确定AmbE-CmodAA域的结构.
- 检测关键残留物的功能.
主要成果:
- 生物化学和生物信息学证据支持CmodAA领域作为脱水剂.
- 获得了AmbE-CmodAA的晶体结构,揭示了二次形状.
- 突变研究发现了对AmbE活性至关重要的保留残留物.
- 双层结构表明潜在的基质转移机制.
结论:
- 在各种非核糖体路径中,CmodAA域在脱氨基酸生物合成中发挥着中心作用.
- 这项工作为CmodAA领域的机制提供了洞察力.
- 了解CmodAA功能可以促进含有脱氨基酸的天然产品的发现和工程.
更多相关视频
13:34Production, Crystallization and Structure Determination of C. difficile PPEP-1 via Microseeding and Zinc-SAD
Published on: December 30, 2016
11.6K
11:27X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
4.0K
相关概念视频
Dehydration Synthesis
135.7K
Overview
Dehydration synthesis (also called a condensation reaction) is the chemical process in which two molecules covalently link together to form a new molecule, along with the release of a water molecule. Many physiologically important compounds form by dehydration synthesis reactions, such as complex carbohydrates, proteins, DNA, and RNA.
Synthesis of carbohydrates
Sugar molecules are covalently linked together by dehydration synthesis. During the reaction, the hydroxyl (-OH) group from...
Dehydration synthesis (also called a condensation reaction) is the chemical process in which two molecules covalently link together to form a new molecule, along with the release of a water molecule. Many physiologically important compounds form by dehydration synthesis reactions, such as complex carbohydrates, proteins, DNA, and RNA.
Synthesis of carbohydrates
Sugar molecules are covalently linked together by dehydration synthesis. During the reaction, the hydroxyl (-OH) group from...
135.7K
Peptidoglycan Synthesis
273
Structure of PeptidoglycanPeptidoglycan is a vital structural component of the bacterial cell wall, providing mechanical strength and shape to the cell. It consists of repeating units of two sugars—N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM)—linked by β-1,4 glycosidic bonds. These sugar chains are cross-linked by short peptide chains, forming a mesh-like polymer that surrounds the bacterial plasma membrane.Cytoplasmic Phase – Precursor SynthesisPeptidoglycan...
273
Protein Folding
120.2K
Overview
120.2K
Bacterial Protein Maturation
79
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
79
Termination of Translation
25.7K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
25.7K
Conservation of Protein Domains Over Different Proteins
11.2K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
11.2K
