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相关概念视频

Genomics02:02

Genomics

36.9K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Epigenetic Regulation01:37

Epigenetic Regulation

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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
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Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Epistasis Analysis01:09

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Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
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Histone Modification02:32

Histone Modification

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The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
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Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection
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Spatial Profiling of Protein and RNA Expression in Tissue: An Approach to Fine-Tune Virtual Microdissection

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空间表观基因组学

Florian Schueder1, Joerg Bewersdorf2

  • 1Department of Cell Biology, Yale School of Medicine, New Haven, CT, USA; Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.

Cell
|November 11, 2022
PubMed
概括
此摘要是机器生成的。

空间奥米克技术为组织提供详细的分子数据. 新的表观遗传多重复合方法,如多重复合错误强大的FISH (MERFISH),可以研究特定组织区域的基因表达调节.

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科学领域:

  • 分子生物学
  • 基因组学
  • 细胞生物学

背景情况:

  • 空间奥米克技术提供来自组织的高分辨率分子数据.
  • 了解细胞的身份和功能依赖于空间背景中的分子概况.
  • 表观遗传学调节在基因表达中起着至关重要的作用,但需要空间解析.

研究的目的:

  • 介绍和演示用于空间基因表达分析的表观复杂化方法.
  • 为了研究特定组织区域的表观基因调节.
  • 推进空间奥米学理解细胞过程的能力.

主要方法:

  • 复合错误强大的FISH (MERFISH) 技术.
  • 高通量分子分析.
  • 在组织中获得空间分辨率的数据.

主要成果:

  • MERFISH允许对RNA分子进行多重检测.
  • 该方法提供了关于基因表达的空间分辨率信息.
  • 能够以特定组织的方式研究表观遗传学调节.

结论:

  • 像MERFISH这样的表观遗传复合方法是空间转录学的强大工具.
  • 这种技术有助于在定义的组织微环境中研究基因表达调节.
  • 空间奥米学的进步对于解剖复杂的生物系统至关重要.