挖掘元转录体揭示了一个巨大的病毒状圆形RNA
Benjamin D Lee1, Uri Neri2, Simon Roux3
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA; Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK.
Cell
|January 25, 2023
概括
研究人员使用计算管道发现了成千上万的新型病毒状循环RNA (cccRNA),显著扩大了这些最小复制者的已知多样性,并表明了比以前理解的更广泛的宿主范围.
科学领域:
- 病毒学
- 计算生物学
- 基因组学
背景情况:
- 病毒和病毒样圆形RNA (cccRNA) 是缺乏蛋白质编码基因的最小复制体.
- 它们的复制依赖于宿主细胞机械.
- 这些病原体的全部范围和多样性在很大程度上是未知的.
研究的目的:
- 开发和应用一种用于识别类似病毒的ccRNA的计算管道.
- 评估各种转录组中这些病原体的多样性和流行程度.
- 发现新型的状元素及其潜在宿主.
主要方法:
- 开发用于识别ccRNA的计算管道.
- 该管道应用于5131个元转录组和1344个植物转录组.
- 对已识别的ccRNA进行生物信息分析以进行分类和表征.
主要成果:
- 在4,409个物种级别集群中鉴定了11,378个类似病毒的cccRNA,比之前的发现增加了五倍.
- 发现了各种假定病毒,卫星RNA,逆酶和类似于 ribozyme 的病毒.
- 在各种ccRNA类型中检测到自我分裂的 ribozymes 和证据表明 prokaryotic 复制.
结论:
- 病毒类cccRNA比以前认可的更为多样化和广泛.
- 这些代理物具有更广泛的宿主范围,可能包括原核生物.
- 这些发现需要重新评估最小复制体在各种生态系统中的作用和影响.
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