蛋白质动力学和催化与过渡路径采样之间的关系的原子描述
Dimitri Antoniou1, Ioanna Zoi1, Steven D Schwartz1
1Department of Biochemistry, University of Arizona, Tucson, AZ, United States.
Methods in enzymology
|May 28, 2023
概括
蛋白质动力学对于酶催化是至关重要的. 这篇综述强调了通过过渡路径采样揭示的快速,反应合的运动如何驱动酶反应并告知蛋白质设计.
科学领域:
- 生物化学和酶学 生物化学和酶学
- 计算生物物理学的计算生物物理.
- 蛋白质动力学 蛋白质动力学
背景情况:
- 蛋白质动力学越来越多地被认为是它们在酶催化中的作用.
- 有两个研究领域:缓慢运动指导到有能力的状态和快速运动与反应坐标相结合.
- 对这些动态,特别是快速运动的原子理解仍然是一个挑战.
结论:
- 快速蛋白质动态在酶催化中发挥着直接的,机械的作用.
- 像TPS这样的计算方法对于在原子层面阐明这些动态至关重要.
- 对蛋白质动态的洞察力可以用于设计新型生物催化剂.
相关概念视频
Protein Dynamics in Living Cells
2.2K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
2.2K
Introduction to Enzyme Kinetics
20.2K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
20.2K
Enzyme Kinetics
97.4K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
97.4K
Cooperative Allosteric Transitions
2.3K
2.3K


