在RiPP生物合成期间的宏循环和脊柱重组,由SAM依赖的未知功能的域692进行生物合成
Richard S Ayikpoe1,2, Lingyang Zhu3, Jeff Y Chen1,2
1Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, 61801, Illinois, United States.
ACS central science
|May 30, 2023
概括
研究人员确定了ChrH,这是DUF692家族中的一种新型酶,它催化了一种独特的化学转化. 这一发现扩大了这些含铁酶的已知功能,并提出了一个新的家族名称:多核非血铁依赖氧化酶 (MNIOs).
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 自然产品 化学 化学
背景情况:
- DUF692 (功能域不明692) 家族包括新兴的翻译后修饰酶.
- 这些酶在合成核糖体合成和翻译后改性 (RiPP) 的天然产品中至关重要.
- DUF692酶是含铁的多核酶,以前只有MbnB和TglH的特征.
研究的目的:
- 为了研究DUF692家族的另一个成员,ChrH,在*Chryseobacterium*物种中发现.
- 为了阐明由ChrH-ChrI酶复合物催化的化学转化.
- 提出一个反应机制,并重新分类DUF692家族.
主要方法:
- 生物信息分析以确定ChrH及其伴侣蛋白ChrI.
- ChrH反应产物的结构特征.
- 同位素标记研究以确定反应机制.
主要成果:
- ChrH-ChrI复合物催化了一种前所未有的反应,形成一个宏循环,imidazolidinedione异循环,thioaminals和一个 thiomethyl 组.
- 确定了第一个由DUF692酶复合物催化的S-adenosylmethionine (SAM) 依赖反应.
- 一个为基质的四电子氧化和甲基化提出的机制.
结论:
- ChrH扩展了已知的DUF692酶的化学谱.
- 这项研究确定了一种新的SAM-依赖的酶反应.
- 基于特征成员的建议,重新命名DUF692家族为多核非血红素铁依赖氧化酶 (MNIOs).
相关概念视频
Riboswitches
8.2K
Riboswitches are non-coding mRNA domains that regulate the transcription and translation of downstream genes without the help of proteins. Riboswitches bind directly to a metabolite and can form unique stem-loop or hairpin structures in response to the amount of the metabolite present. They have two distinct regions – a metabolite-binding aptamer and an expression platform.
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
8.2K
Ribosomal RNA Synthesis
13.3K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.3K
Biosynthesis of Nucleic Acids
88
Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...
88
Transcriptional Regulation: Riboswitches
63
Riboswitches are RNA elements that regulate gene expression by altering their secondary structures in response to specific effector molecules. These elements, located in the leader regions of certain mRNAs, act as transcriptional regulators by toggling between alternative conformations to control downstream gene expression. Riboswitch-mediated regulation is a precise mechanism for modulating biosynthetic pathways, as exemplified by the riboflavin biosynthesis pathway in Bacillus...
63
Ribozymes
12.3K
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can...
Ribozymes can...
12.3K
Experimental RNAi
6.2K
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
6.2K


