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相关概念视频

Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
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Allosteric Regulation01:08

Allosteric Regulation

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Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
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Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
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Ligand Binding and Linkage00:49

Ligand Binding and Linkage

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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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GPCRs Regulate Adenylyl Cylase Activity01:09

GPCRs Regulate Adenylyl Cylase Activity

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Some GPCRs transmit signals through adenylyl cyclase (AC), a transmembrane enzyme. AC helps synthesize second messenger cyclic adenosine monophosphate (cAMP). AC catalyzes cyclization reaction and converts ATP to cAMP by releasing a pyrophosphate. The pyrophosphate is further hydrolyzed to phosphate by the enzyme pyrophosphatase, which drives cAMP synthesis to completion. However, cAMP is rapidly degraded to 5′ AMP by the enzymes phosphodiesterase (PDE), preventing overstimulation of...
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Antihypertensive Drugs: Angiotensin-Converting Enzyme Inhibitors01:30

Antihypertensive Drugs: Angiotensin-Converting Enzyme Inhibitors

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Angiotensin-converting enzyme (ACE), a vital component of the renin-angiotensin-aldosterone system, is abundant in lung endothelial cells. ACE converts the inactive decapeptide, angiotensin I, into the active octapeptide, angiotensin II. This potent vasoconstrictor narrows blood vessels, increasing resistance to blood flow and elevating blood pressure. Angiotensin II also stimulates aldosterone production, encouraging kidney cells to reabsorb more sodium and water from urine, thereby increasing...
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Engineering Antiviral Agents via Surface Plasmon Resonance
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在ACE2活性部位和与SARS-CoV-2结合的结合界面之间进行体通信.

Mauro L Mugnai1, D Thirumalai1,2

  • 1Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, USA.

The Journal of chemical physics
|June 1, 2023
PubMed
概括

与ACE2结合的SARS-CoV-2会影响酶活性. 复杂的分离打开了ACE2结合裂,揭示了关键的甘氨酸残留物,参与了分解.

科学领域:

  • 生物物理学的生物物理.
  • 结构生物学 结构生物学
  • 病毒学 病毒学

背景情况:

  • 严重急性呼吸系统综合征冠状病毒2 (SARS-CoV-2) 侵入细胞,使用其受体结合域 (RBD) 结合 ангиотензин转化酶2 (ACE2).
  • 了解RBD-ACE2相互作用的动态对于开发抗病毒策略至关重要.
  • 以前的研究集中在结合亲和力和突变效应上,但解离的全性后果较少被探索.

研究的目的:

  • 为了研究由SARS-CoV-2 RBD-ACE2复合物的解离引发的全信号.
  • 阐明ACE2在复杂拆卸时的结构和动态变化.
  • 为了确定参与解离过程的关键残留物.

主要方法:

  • 弹性网络模型 (ENM) 构建以表示ACE2-RBD复合体.
  • 结构性扰乱方法 (SPM) 用于分析复杂解离的影响.
  • 计算建模用于研究蛋白质动力学和全信号传递.

主要成果:

  • 复杂的解离导致ACE2基质结合裂的打开,位于RBD接口的远端.
  • SARS-CoV-2 RBD 结合促进了 ACE2 结合裂内的波动.
  • 一个保存的甘氨酸残留物 (SARS-CoV-2中的G502) 被确定为复杂拆卸的关键.

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结论:

  • 这项研究为SARS-CoV-2结合如何影响ACE2酶活性提供了结构和动态基础.
  • RBD-ACE2复合物的解离会诱导ACE2中的显著构造变化.
  • 准已识别的关键甘氨酸残留物可能是破坏病毒结合的潜在策略.