转录组测序表明,mRNA前拼接可以抵消广泛的内基分裂和多基化
Maria Vlasenok1, Sergey Margasyuk1, Dmitri D Pervouchine1
1Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Bolshoy Bulvar 30, Moscow 121205, Russia.
NAR genomics and bioinformatics
|June 1, 2023
概括
替代多基化 (APA) 在内子中比外子更频繁地发生. 新的发现表明,拼接的多基化内子 (SPI) 产生于合拼接和APA,可能防止过早的转录终止.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 生物信息学是一种生物信息学.
背景情况:
- 替代拼接 (AS) 和替代多基化 (APA) 是转录后基因调节的关键机制.
- 在正常和疾病状态中观察到内部多基化 (IPA),通常归因于随机的mRNA前处理变异.
研究的目的:
- 为了研究组织特异性内部多基化部位和拼接模式之间的关系.
- 通过大规模RNA测序数据,识别和表征内部的新型APA事件.
主要方法:
- 利用基因型-组织表达 (GTEx) 项目的RNA测序数据.
- 应用计算方法,包括分析与非模板腺因的短读数,以识别APA事件.
- 与组织特异拼接相关的内基多基化部位表达.
主要成果:
- 与外体相比,APA事件在内体中更为普遍.
- 显著的一小部分IPA事件被确定没有相关的AS,称为拼接聚乙烯化内核 (SPI).
- 复合和跳过终端外子中的IPA与拼接呈现相关性,与SPI不同.
结论:
- SPI可能是APA和AS之间动态相互作用的结果,在此过程中,内部子被剪接,同时被切割和多化.
- 协转录前mRNA剪接可能会在内基多基化位点对过早的转录终止起到保护作用.
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