在Ser65的酸化调节了乌比奎丁的形状动态
Remy A Yovanno1, Alvin Yu2, Tyler J Wied1
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, 725 N. Wolfe Street, WBSB 706, Baltimore, MD 21205, USA.
Structure (London, England : 1993)
|June 2, 2023
概括
乌比奎在Ser65的酸化驱动了线粒体的降解,通过使一种罕见的C-终端收缩构造成为可能. 发现了一种新的Bent中间体,揭示了无处不在的形变化的分子机制.
科学领域:
- 生物化学 生化学
- 分子生物学分子生物学
- 细胞生物学 细胞生物学
背景情况:
- 乌比基在Ser65的酸化对线粒体的降解至关重要.
- 在这个过程中,Major和C-终端收缩 (CR) 基形状之间的过渡是关键.
- 控制这种形状相互转换的精确机制仍然不清楚.
研究的目的:
- 阐明在Major和CRubiquitin形状之间相互转换的分子机制.
- 识别涉及到无处不在形状变化的中间状态和途径.
主要方法:
- 所有原子分子动力学模拟使用字符串方法与轨迹群.
- 计算Major和CR对应器之间的最低自由能量路径.
- 温和的元动力学计算和动态网络建模.
主要成果:
- 在从Major到CR的过渡过程中,确定了稳定的"Bent"中间形状.
- 这种Bent中间体的特点是C端向CR状态转移,而Ser65酸化接触保持Major类.
- 一个Gln2Ala突变破坏了中间体的稳定性,动态网络分析显示,在过渡过程中,pSer65近位残留物与β1链脱.
结论:
- 这项研究揭示了一个全新的Bent中间体在ubiquitin形态动力学.
- 这一发现澄清了Major到CR的泛素过渡机制,这对线粒体降解至关重要.
- 结果突出了特定残留物相互作用和网络动态在调节无素构成中的作用.
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