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Updated: Jul 27, 2025

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Ultra-long Read Sequencing for Whole Genomic DNA Analysis
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全基因组测序的全基因组测序
Mohamed Zeineldin1, Patrick Camp1, David Farrell1
1National Veterinary Services Laboratories, Veterinary Services, Animal and Plant Health Inspection Service, United States Department of Agriculture, Ames, IA, United States.
Frontiers in microbiology
|June 5, 2023
概括
现在可以直接从组织样本中对Mycobacterium bovis (M. bovis) 进行全基因组测序 (WGS),不再需要细菌培养. 这一进步大大加快了基因组分析的研究和诊断.
科学领域:
- 基因组学就是基因组学.
- 微生物学 微生物学
- 兽医医学 兽医医学 兽医医学
背景情况:
- 在临床诊断和研究中,Mycobacterium bovis (M. bovis) 的全基因组测序 (WGS) 是至关重要的.
- 目前的方法需要从组织中培养M. bovis,由于高宿主DNA污染,这耗时且具有挑战性.
- 从组织中直接测序DNA受到宿主DNA的大量阻碍.
研究的目的:
- 评估一种基于RNA的向丰富方法,用于直接从没有先前培养的组织样本中测序M. bovisDNA.
- 在直接组织样本测序中克服宿主DNA污染的挑战.
- 评估从受感染的动物组织中直接M. bovis WGS的可行性和准确性.
主要方法:
- 开发并优化了基于RNA的有针对性的丰富方法,使用SureSelect自定义捕获库RNA诱.
- 应用了SureSelect XT HS2目标丰富系统用于Illumina对结尾测序.
- 验证了该方法,使用刺组织样本和自然/实验感染的动物组织,具有不同的M. bovis负载 (Ct值).
主要成果:
- 在尖端样本中实现了高平均基因组覆盖率 (99.1%和98.8%),证明了方法的灵敏性.
- 从感染的组织样本中成功测序了M. bovis基因组,平均覆盖率高 (99.56%) 和深度可变 (9.2×72.1×).
- 来自直接组织测序的基因组数据 (spoligotyping和组分配) 准确匹配了培养分离物的结果.
结论:
- 使用基于RNA的向丰富的组织样本中M. bovisDNA的直接WGS是可行的和准确的.
- 与基于培养的测序相比,这种方法显著减少了周转时间.
- 该方法有可能在研究和诊断环境中用于快速M. bovis基因组分析的常规应用.
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