在环境高分辨率质谱数据的非目标选中,基于机器学习的危险驱动的特征优先级
Katarzyna Arturi1, Juliane Hollender1,2
1Department of Environmental Chemistry, Swiss Federal Institute of Aquatic Science and Technology (Eawag), Ueberlandstrasse 133, 8600 Dübendorf, Switzerland.
Environmental science & technology
|June 6, 2023
概括
一个新的机器学习框架,MLin vitroTox,使用质谱数据快速根据毒性对环境污染物进行分类. 这种方法优先考虑高风险物质进行进一步调查,改进环境安全评估.
科学领域:
- 环境化学环境化学
- 毒理学 毒理学 毒理学
- 计算化学计算化学
背景情况:
- 非目标高分辨率质谱检测 (NTS HRMS/MS) 在环境样本中检测到许多有机物质.
- 当前的方法往往集中在丰富的化合物上,可能忽略了更有害的化合物.
- 有效地优先考虑具有毒性潜力的特征对于有效的环境风险评估至关重要.
研究的目的:
- 开发一种机器学习框架,MLin vitroTox,用于对未识别的HRMS/MS特征进行快速毒性预测.
- 利用MS2碎片化光谱中的分子指纹来将化合物分类为有毒或无毒.
- 改善对环境相关有毒物质的识别工作的重点.
主要方法:
- 开发了MLin vitroTox,这是一个机器学习框架,使用MS2光谱的分子指纹.
- 在ToxCast/Tox21数据上训练模型,包括近400个特定目标和100多个细胞毒性终点.
- 使用SIRIUS分子指纹和xboost模型与SMOTE进行可靠的分类.
主要成果:
- MLin vitroTox准确预测了超过四分之一的毒性终点,灵敏度超过0.95.
- 在MassBank光谱上验证,达到0.75的平均平衡精度用于毒性预测.
- 从数万个信号的焦点减少到783个特征,这些特征与环境样本中的潜在毒性有关.
结论:
- 根据预测的毒性,MLin vitroTox提供了一种快速有效的方法来优先考虑环境污染物.
- 该框架成功识别了已确认有毒活性的特征,有助于有针对性的分析.
- 这种方法提高了环境监测和风险评估的效率和准确性.
关键词:
人力资源管理系统/管理系统西里乌斯 (Sirius) 是一个神话.托克斯2121是什么意思在 ToxCast 里面,你会看到 ToxCast.极端的梯度增强了极端的梯度.监督的分类监督的分类.毒性预测 毒性预测更多相关视频
07:34Large Scale Non-targeted Metabolomic Profiling of Serum by Ultra Performance Liquid Chromatography-Mass Spectrometry UPLC-MS
Published on: March 14, 2013
12.8K
09:38Single-throughput Complementary High-resolution Analytical Techniques for Characterizing Complex Natural Organic Matter Mixtures
Published on: January 7, 2019
8.7K
相关概念视频
High-Resolution Mass Spectrometry (HRMS)
1.5K
The resolution of a mass spectrometer depends on the efficiency of separating ions with different ion masses. The mass of an atom is approximated to the sum of the masses of protons and neutrons inside, considering the masses of protons and neutrons as equal. However, the masses of the proton (1.6726 × 10−24 g) and neutron (1.6749 × 10−24 g) are not truly equal. There is a minor error in the expression of atomic masses relative to the simplest atom of hydrogen. For...
1.5K
Mass Spectrometry: Complex Analysis
832
Mass spectrometry is an important technique for the identification of pure compounds. However, it has some limitations for the analysis of complex mixtures, often due to excessive fragmentation making the spectrum too complicated to decipher. Mass spectrometry can be combined with suitable separation methods in sequence, forming hyphenated methods, which are useful in the analysis of complex mixtures.
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
832
Peptide Identification Using Tandem Mass Spectrometry
6.6K
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
6.6K
