染色质在千基基数尺度上的A和B区间之间交替进行亚基组织的基因组组织
Hannah L Harris1, Huiya Gu2, Moshe Olshansky3
1Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, USA.
Nature communications
|June 6, 2023
概括
高分辨率的3D基因组测绘揭示了核区间比以前认为的更加精确. CTCF循环影响近位相互作用和基因活性,挑战现有的染色体组织模型.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 三维染色体组织对于基因调节至关重要.
- 在超细尺度上研究核区和CTCF循环受到测序深度的限制.
研究的目的:
- 在前所未有的超细尺度上批判性地检查核区和CTCF循环-近端相互作用.
- 开发和应用新的计算算法来分析大规模的Hi-C数据集.
- 改进3D基因组组织模型.
主要方法:
- 在现场的Hi-C测序产生了330亿次接触.
- 在稀疏,超大质量矩阵上进行主要组件分析的POSSUMM算法的开发.
- 生物物理模型.生物物理模型.
主要成果:
- 核区分的分辨率为500bp. 分辨率.
- 活性促进剂和增强剂主要局限于A区.
- 从CTCF循环辐射出的分散相互作用与增强剂-促进剂活性相关,并取决于CTCF的RNA结合域.
结论:
- 核区块比通常认为的更加精确.
- CTCF循环更长时间,并影响近端基因转录.
- 这些发现表明了细度染色体组织的修订模型.
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