围质蛋白酶-伴奏 DegP 的组装景观中的灵活的客户端依赖
Robert W Harkness1,2,3,4, Zev A Ripstein1,2,3,4, Justin M Di Trani4
1Department of Biochemistry, University of Toronto, Toronto M5S 1A8, Canada.
Journal of the American Chemical Society
|June 7, 2023
概括
细菌蛋白DegP在压力时形成类似子的结构以捕获和处理客户端蛋白质. 这项研究揭示了DegP
科学领域:
- 细菌蛋白质稳态
- 分子陪伴者
- 结构生物学
背景情况:
- DegP是一种双功能蛋白酶,对格拉姆阴性细菌生存至关重要.
- 它通过形成类似子的结构来捕获客户端蛋白质来维持蛋白质平衡.
- 根据患者体型而形成DegP的机制以前尚不清楚.
研究的目的:
- 调查DegP子大小和客户端蛋白质大小之间的关系.
- 阐明DegP组装和客户端封装的结构基础.
- 了解DegP如何适应其结构以适应不同的客户端基板.
主要方法:
- 具有不同水力动力半径的DegP客户端的工程.
- 动态光散射 (DLS) 用于评估水力动力学特性.
- 低温电子显微镜 (cryo-EM) 用于测定DegP的结构.
主要成果:
- DegP形成了新结构,大约有30和60个单体.
- 确定了稳定DegP和启动催化剂的关键相互作用.
- 可以达到与亚细胞器官相匹配的尺寸.
结论:
- 在子形成中,DegP表现出了显著的可塑性,可以容纳不同尺寸的客户.
- 结构洞察力揭示了在压力下捕获和处理客户的机制.
- DegP形成大的能力凸显了它在细菌应激反应和生存中的关键作用.
更多相关视频
10:24Defining Hsp33's Redox-regulated Chaperone Activity and Mapping Conformational Changes on Hsp33 Using Hydrogen-deuterium Exchange Mass Spectrometry
Published on: June 7, 2018
8.7K
13:34Production, Crystallization and Structure Determination of C. difficile PPEP-1 via Microseeding and Zinc-SAD
Published on: December 30, 2016
11.6K
相关概念视频
Molecular Chaperones and Protein Folding
18.1K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
18.1K
Coat Assembly and GTPases
3.6K
Vesicles incorporate different coat protein subunits in different cell locations, which changes the properties of the coat, such as the shape and geometry of the transport vesicles. Thus, vesicle coat proteins also play a significant role in cargo selection.
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
Coat assembly depends on the local availability of phosphatidylinositol phosphates or PIPs and GTP-binding proteins. Adaptor proteins, which link the coat proteins to the membrane, bind to these PIPs and play a crucial role in controlling...
3.6K
Bacterial Protein Maturation
40
Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
40
Assembly of Signaling Complexes
5.8K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.8K
Intrinsically Disordered Proteins
17.9K
Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
17.9K
Protein Complexes with Interchangeable Parts
2.6K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.6K
