下一代DNA测序比传统的培养测试提供了诊断优势
Annabelle Damerum1, Shachar Malka2, Nicolle Lofgren3
1Zymo Research Corporation, Irvine, CA.
American journal of veterinary research
|June 8, 2023
概括
下一代测序 (NGS) 显著优于传统培养方法,用于诊断异国动物中的细菌和真菌感染. NGS发现了许多在培养过程中错过的病原体,提高了异国动物医学的诊断准确度.
科学领域:
- 兽医诊断 兽医诊断 兽医诊断 兽医诊断
- 微生物学 微生物学
- 基因组学就是基因组学.
背景情况:
- 下一代测序 (NGS) 在人类和常见物感染方面得到了临床验证.
- 异国动物诊断面临着传统文化的挑战,特别是无氧和真菌病原体.
- 聚合酶连锁反应 (PCR) 提供了灵敏度,但针对的是有限的病原体板.
研究的目的:
- 评估NGS的诊断实用性与异国动物中细菌和真菌病原体的常规培养相比.
- 在这种独特的患者群体中评估基于培养的诊断的局限性.
主要方法:
- 来自78只异国动物的临床样本使用常规培养和NGS进行了分析.
- 两种方法的结果在检测细菌和真菌病原体和共生动物方面进行了比较.
主要成果:
- 在外来动物样本中,NGS揭示了显著的细菌和真菌多样性.
- 培养试验表现出低灵敏度,未能检测到15%的细菌和81%的真菌病原体,这些病原体是由NGS.
- 与NGS相比,培养导致"没有生长"诊断的可能性更高 (细菌为14%,真菌为49%) NGS.
结论:
- 传统的培养方法经常无法在异国动物中诊断出细菌和真菌病原体.
- NGS提供了卓越的诊断能力,可以检测到更广泛的病原体.
- NGS代表了外来动物医学的临床先进诊断工具,克服了传统文化的局限性.
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