基于其子单元的交替移位的核糖体转位模型
1Seminario de Bifurcaciones y Singularidades, Departamento de Matemáticas, Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186 Col. Vicentina, 09340, Iztapalapa, Ciudad de México, México. jsgg@xanum.uam.mx.
European biophysics journal : EBJ
|June 8, 2023
概括
核糖体通过交替的子单元抓取来沿着mRNA移动,这一过程由替代位移假说解释. 这个模型准确地预测了核糖体转位速度和停滞力,与实验数据保持一致.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
背景情况:
- 核糖体转位对于蛋白质合成至关重要.
- 尽管有强大的结合力,但核糖体沿着mRNA移动的机制仍然不清楚.
研究的目的:
- 提出和验证一项关于核糖体转位的新假设.
- 为了解释核糖体如何沿着mRNA移动,同时保持紧密的抓地.
主要方法:
- 开发了与mRNA的核糖体子单元相互作用的"替代性位移假说".
- 将核糖体动力学建模为马尔科夫网络.
- 转位速度和停机力的衍生表达式.
主要成果:
- 替代位移假说为核糖体转位提供了一个可行的解释.
- 计算的转位速度和停机力与实验结果一致.
- 提出的分子事件与当前对核糖体功能的理解一致.
结论:
- 核糖体的运动依赖于其子单元交替抓住和释放mRNA.
- 这种机制允许沿着遗传密码进行高效和连续的转移.
- 该模型为理解核糖体动态提供了一个定量框架.
相关概念视频
Cotranslational Protein Translocation
7.4K
Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
7.4K
Post-translational Translocation of Proteins to the RER
5.8K
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
5.8K
Improving Translational Accuracy
11.7K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.7K
Ribosomes
7.8K
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
7.8K
Termination of Translation
25.5K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
25.5K
Initiation of Translation
34.2K
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
34.2K


