在最初的流行浪潮期间,急性SARS-CoV-2感染的宿主内部突变率
Kim El-Haddad1, Thamali M Adhikari2, Zheng Jin Tu3
1Center for Pediatric Infectious Disease, Cleveland Clinic Children's, R3, 9500 Euclid Avenue, Cleveland, 44195 , OH, USA. elhaddk@ccf.org.
Virus genes
|June 13, 2023
概括
主体内SARS-CoV-2突变率高于人口估计. 改变的NSP-14和免疫共发病症显著增加患者内的病毒突变率.
科学领域:
- 病毒学 病毒学
- 基因组学就是基因组学.
- 进化生物学 进化生物学
背景情况:
- SARS-CoV-2的校对主要由NSP-14管理.
- 基于人口的序列数据传统上为SARS-CoV-2突变率估计提供了信息.
- 宿主内部的病毒进化动态仍然不太清楚.
研究的目的:
- 为了分析宿主内部的SARS-CoV-2突变率.
- 为了比较具有和没有NSP-14突变的病毒分离物之间的突变率.
- 调查患者并发症对病毒突变率的影响.
主要方法:
- 对40个配对的患者样本进行病毒基因组分析.
- 在等位基因频率 (AF) ≥0.25,≥0.5和≥0.75.5的突变量化.
- 应用F81和JC69进化模型来确定突变率.
主要成果:
- 主体内突变率远高于基于人口的估计.
- 具有NSP-14突变的病毒分离物 (ΔNSP-14) 在AF ≥0.25.25时显示显著增加的突变率.
- 患有免疫共发病症的患者在所有测试的等位基因频率中表现出更高的突变率.
结论:
- 宿主内部病毒进化分析为SARS-CoV-2动态提供了关键的见解.
- NSP-14的变化加快了突变率,特别是在较低的等位基因频率.
- 了解宿主内部的进化对于流行病的准备和建模至关重要.
相关概念视频
Viral Mutations
32.6K
A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
32.6K
Single Nucleotide Polymorphisms-SNPs
15.3K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
15.3K
Mutations in Microorganisms
36
Mutations are heritable changes in an organism’s genome involving alterations in the base sequence of DNA or RNA. These changes can influence cellular processes and phenotypic traits, potentially transforming the unaltered wild type into a mutant form. Such changes, termed forward mutations, are pivotal in shaping the genetic diversity of organisms.RNA viruses exhibit the highest mutation rates due to the absence of robust proofreading mechanisms during genome replication. In contrast,...
36
Gene Evolution - Fast or Slow?
7.2K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.2K
Mismatch Repair
4.9K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
4.9K
Viral Recombination
23.6K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
23.6K


