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相关概念视频

Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

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ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
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Protein Organization01:24

Protein Organization

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Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
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Protein Folding01:22

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Overview
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Conservation of Protein Domains Over Different Proteins02:26

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Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
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Protein and Protein Structure02:15

Protein and Protein Structure

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Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
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Conservation of Protein Domains02:26

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相关实验视频

Updated: Jul 26, 2025

A Protocol for Computer-Based Protein Structure and Function Prediction
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A Protocol for Computer-Based Protein Structure and Function Prediction

Published on: November 3, 2011

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在蛋白质晶体结构模型中进行序列分配验证,使用checkMySequence.

Grzegorz Chojnowski1

  • 1European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany.

Acta crystallographica. Section D, Structural biology
|June 14, 2023
PubMed
概括
此摘要是机器生成的。

在宏分子模型中,序列寄存器转移很难被检测出来. 这项研究展示了一种新方法,可以在晶体结构中找到这些错误,从而提高模型的准确性和可靠性.

关键词:
检查我的序列检查我的序列在 findMySequence 中找到我的序列.宏分子晶体学 宏分子晶体学模型验证模型验证登记轮班的时间表.序列验证的验证顺序.

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Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
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科学领域:

  • 结构生物学 结构生物学
  • 晶体学 晶体学是指结晶学.
  • 生物物理学的生物物理.

背景情况:

  • 序列寄存器转移是宏分子模型中的微妙错误.
  • 这些错误可能会损害实验数据的解释,并影响后续的模型构建.
  • 之前的工作展示了一种方法来检测这些转移在冷电子显微镜 (cryo-EM) 模型.

研究的目的:

  • 适应和验证一种用于检测X射线晶体结构模型中的序列寄存器移位的方法.
  • 为了证明这种方法的实用性,使用标准的晶体电子密度图.
  • 在存储蛋白质数据库 (PDB) 模型中识别和报告序列注册错误.

主要方法:

  • 系统地将短模型碎片重新分配到目标序列.
  • 使用标准的,经模型偏差校正的电子密度图 (2mFo - D Fc).
  • 将碎片重新分配方法应用于晶体结构模型.

主要成果:

  • 碎片重新分配方法成功地检测了晶体结构中的序列寄存器移位.
  • 在蛋白质数据库 (PDB) 中的模型中发现了五个不同的序列注册错误.
  • 该方法提供了一种可靠的方式来评估序列模型对应.

结论:

  • 开发的方法对于识别X射线晶体结构中的序列寄存器错误是有效的.
  • 这种方法提高了宏分子模型的质量控制.
  • 准确的宏分子模型对于可靠的生物学解释和下游研究至关重要.