36个中国种群的泛基因组参考
Yang Gao1,2,3,4, Xiaofei Yang5,6,7, Hao Chen3
1State Key Laboratory of Genetic Engineering, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China.
Nature
|June 14, 2023
概括
中国泛基因组联盟从多个不同族群中创建了高质量的基因组组,大大扩展了人类泛基因组. 这项研究提高了亚洲人群的基因组代表性, 并有助于理解人类进化和疾病.
科学领域:
- 基因组学
- 人口遗传学
- 生物信息学
背景情况:
- 目前的人类基因组 (GRCh38) 缺乏来自全球多样化人口的代表性,特别是亚洲血统的人.
- 转向泛基因组方法对于更全面地了解人类遗传变异至关重要.
研究的目的:
- 通过创建高质量的泛基因组来解决亚洲人口在基因组学中的不足.
- 识别目前参考文献中缺少的新基因变异和序列.
主要方法:
- 从36个少数民族的58个核心样本中生成了116个高质量的,以哈普类型为阶段的新基因组组.
- 使用高保真长读数测序,平均覆盖率为30.65×.
- 与现有参考相比,分析了小型和结构变体的组件.
主要成果:
- 在GRCh38中增加了189万个基因对和1367个蛋白质编码基因复制.
- 鉴定了1590万个小变异和78072个结构变异,与最近的泛基因组参考相比,有数百万个新变异.
- 在缺失的序列中发现了丰富的古老基因和功能性重要基因.
结论:
- 中国泛基因组联盟的数据显著改善了代表性不足的人群的基因组代表性.
- 这些发现为人类进化,适应和复杂疾病的遗传基础提供了洞察力.
- 这项工作强调了多元化数据在基因组医学进步中的重要性.
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