将代谢供应与需求相匹配,可以优化微生物生长
Avi I Flamholz1, Akshit Goyal2
1Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Resnick Sustainability Institute, California Institute of Technology, Pasadena, CA 91125, USA.
Trends in microbiology
|June 17, 2023
概括
微生物优先考虑生长速度,但实验室进化揭示了更快的潜力. 一种新的资源分配模型通过考虑微生物如何平衡细胞过程以实现最佳生长来解释这种差异.
科学领域:
- 微生物生理学 微生物生理学
- 生物物理学的生物物理.
- 进化生物学是进化的生物学.
背景情况:
- 微生物被认为分配资源以最大限度地提高生长率 (λ).
- 实验室进化实验表明,微生物可以比目前的模型预测的增长速度快得多.
- 这种差异表明现有的资源分配理论存在局限性.
研究的目的:
- 解决理论增长率最大化与实验室进化后观察到的更快增长之间的悖论.
- 为微生物生长提出一种新的资源分配模型.
- 为了解微生物适应和优化提供一个框架.
主要方法:
- 从第一原则推导出资源配置模型.
- 微生物生物合成和生长的理论建模.
- 微生物生长限制的分析.
主要成果:
- 该模型解释了微生物如何在实验室进化后增加生长率.
- 它确定了限制增长的资源分配中的关键权衡.
- 该模型提供了一个定量框架,用于预测微生物生长潜力.
结论:
- 微生物生长速度受到资源分配权衡的限制.
- 实验室进化允许微生物克服这些限制,导致更快的生长.
- 开发的模型提供了对微生物生长动态的更全面的理解.
相关概念视频
Microbial Growth Media
46
Microbial growth media are essential tools in microbiology, providing the nutrients and conditions necessary to cultivate and study microorganisms. These media are categorized by their composition, consistency, and functional roles, enabling researchers to investigate microbial physiology, behavior, and interactions.Types and Consistencies of Growth MediaGrowth media can be solid, liquid, or semisolid. Solid media, often agar-based, allow visible colony growth for isolation and enumeration.
46
Methods for Controlling Microbial Growth
171
Microbial growth control refers to various methods employed to inhibit, reduce, or eliminate microorganisms to ensure safety and hygiene across different settings. These methods are categorized based on the target environment and the level of microbial control required.Biocides are versatile agents designed to control microorganisms by either inhibiting their growth or outright killing them. These agents work through various physical, chemical, mechanical, or biological mechanisms. The...
171
Microbial Growth Measurement: Indirect Methods
80
Estimating microbial growth is essential for understanding population dynamics and environmental adaptations. Indirect methods provide valuable insights by measuring parameters such as turbidity, metabolic activity, and biomass, enabling efficient and reproducible assessments.During exponential growth, microbial cells scatter light proportionally to their biomass, a principle used in turbidity measurements. About one million cells per milliliter produce detectable scattering, which a...
80
Amino Acid Catabolism
59
Microorganisms rely on proteins as an essential carbon and energy source, particularly in environments with limited polysaccharides or lipids. However, proteins are too large to cross the plasma membrane unaided, necessitating enzymatic degradation. Microbes secrete extracellular proteases and peptidases that hydrolyze proteins into peptides, which can then be transported across the membrane. Once inside the cell, intracellular proteases degrade these peptides into free amino acids, which...
59
Microbial Nutrition
115
Organisms exhibit remarkable metabolic diversity, categorized based on how they acquire energy and carbon. These strategies enable survival in various ecological niches and are essential for maintaining energy flow and nutrient cycling within ecosystems.Energy and Carbon SourcesOrganisms are classified as phototrophs or chemotrophs based on energy acquisition. Phototrophs use light as their energy source, while chemotrophs rely on oxidizing chemical compounds. Further differentiation arises...
115
Oxygen Requirements and Growth Patterns
164
Microorganisms exhibit diverse oxygen requirements and growth patterns driven by their metabolic strategies and environmental adaptations. Oxygen, while essential for many organisms, can also be toxic under certain conditions, shaping how microorganisms grow and survive.Oxygen Requirements of MicroorganismsMicroorganisms are classified based on their ability to use or tolerate oxygen:Obligate aerobes like Mycobacterium tuberculosis need oxygen for energy production, as it serves as the terminal...
164


