大西洋鱼 (Hippoglossus hippoglossus) 的SNP小组和基因组性别鉴定
Ellen M Weise1, Mallory Van Wyngaarden2,3, Cornelia Den Heyer4
1Department of Biology, Dalhousie University, 1355 Oxford St, B3H 4R2, Halifax, NS, Canada. emweise@dal.ca.
Marine biotechnology (New York, N.Y.)
|June 23, 2023
概括
研究人员开发了大西洋鱼的新基因组工具,以非致命的方式识别性别. 这个SNP小组通过遗传性别测定来实现准确的种群研究和渔业管理.
科学领域:
- 基因组学就是基因组学.
- 人口生物学 人口生物学
- 渔业 科学 渔业 科学
背景情况:
- 准确的性别识别对于理解人口动态至关重要.
- 大西洋鱼缺乏明显的外部性二态,阻碍了传统的性别确定.
- 基因组方法为这种物种的非致命性性别识别提供了解决方案.
研究的目的:
- 开发一个高通量SNP面板,用于大西洋鱼的遗传性识别.
- 为了实现人口研究和渔业管理的非致命性性别确定.
- 创建一个基因组资源,用于未来的人口丰富度估计,使用诸如近亲记号再捕获 (CKMR) 等方法.
主要方法:
- 开发一个具有4000个单核酸多态 (SNP) 的Illumina SNP面板.
- 从12号染色体的性别决定区域选择176个SNP进行DAPC分析.
- 基因组DNA分析用于性别鉴定.
主要成果:
- 一个强大的SNP面板成功地开发了大西洋鱼.
- 通过使用DAPC分析,以高准确度实现了基因性别鉴定.
- 该小组促进非致命性性别确定和现场验证.
结论:
- 开发的SNP小组是大西洋鱼研究的宝贵基因组资源.
- 该工具支持准确的种群评估和有效的渔业管理.
- 基因组性别鉴定对于在缺乏表型二形态的物种中推进种群生物学研究至关重要.
相关概念视频
Genome-wide Association Studies-GWAS
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Comparing Copy Number Variations and SNPs
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Pleiotropy
Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...


