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相关概念视频

Ribosome Profiling02:24

Ribosome Profiling

3.6K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.6K
Proteomics01:33

Proteomics

7.5K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
7.5K
Ribosomes01:27

Ribosomes

68.3K
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
68.3K
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

3.3K
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Ribozymes02:47

Ribozymes

12.3K
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can...
12.3K
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

3.8K
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
3.8K

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相关实验视频

Updated: Jul 25, 2025

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
08:23

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data

Published on: February 18, 2022

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RiboGalaxy:一个基于银河系的网络平台,用于核糖体分析数据处理 - 2023年更新

Alla D Fedorova1, Jack A S Tierney1, Audrey M Michel2

  • 1School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland; SFI Centre for Research Training in Genomics Data Science, University College Cork, Cork, Ireland.

Journal of molecular biology
|June 25, 2023
PubMed
概括

RiboGalaxy,一个用于核糖体分析 (Ribo-Seq) 数据分析的平台,已经更新了新的工具和后端改进. 这些改进提高了Ribo-Seq研究的数据互操作性,可重现性和性能.

关键词:
银河系 银河系 银河系在mRNA的翻译过程中,mRNA的翻译里波-Seqq 的使用.核糖体造型分析是指核糖体造型.翻译ome可以翻译ome.

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A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease
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A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease

Published on: January 10, 2025

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Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project
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Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project

Published on: April 8, 2017

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相关实验视频

Last Updated: Jul 25, 2025

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data
08:23

De novo Identification of Actively Translated Open Reading Frames with Ribosome Profiling Data

Published on: February 18, 2022

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A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease
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A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease

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Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project
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Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project

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科学领域:

  • 基因组学就是基因组学.
  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 核糖体造型 (Ribo-Seq) 提供了细胞转换的子编码分辨率快照.
  • 它提供了对基因表达的洞察力,并有助于发现新的翻译区域.
  • RiboSeq.Org是一个集成的在线资源,用于Ribo-Seq数据处理和分析.

研究的目的:

  • 以新的工具和后端管理策略更新RiboGalaxy平台.
  • 为了提高 RiboSeq.Org 资源之间的互操作性.
  • 为了提高Ribo-Seq数据分析的稳定性,可重复性和性能.

主要方法:

  • 整合RiboGalaxy与Trips-Viz和GWIPS-viz浏览器进行下游分析.
  • 实现 Ansible 的后端配置管理.
  • 在Slurm管理的Singularity容器中执行任务.

主要成果:

  • 改善了RiboSeq.Org资源之间的互操作性.
  • 提高了RiboGalaxy平台的稳定性和可重复性.
  • 加强Ribo-Seq数据处理和分析的性能.

结论:

  • 在RiboGalaxy更新显著增强其能力Ribo-Seq数据分析.
  • 该平台现在提供了更好的集成,稳定性,可重现性和性能.
  • 这些进步有助于对基因表达和转化有更深入的了解.