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相关概念视频

Notch Signaling Pathway03:14

Notch Signaling Pathway

4.3K
The Notch signaling pathway is a major intracellular signaling pathway that is highly conserved over a broad spectrum of metazoan species. It stands unique from other intracellular signaling mechanisms in animals because notch protein itself acts as the receptor as well as the primary signaling molecule.
The Notch gene came into the limelight in 1914 after the discovery that its mutation in Drosophila melanogaster leads to a serrated (or "notched") wing margin phenotype. It was not...
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Pie Chart01:04

Pie Chart

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A pie chart (or a pie graph) is a circular graphical chart or a pictorial representation of categorical data. It is divided into slices of pie each indicating numerical proportions. It is also used to show the relative sizes of data in a single chart.
In a pie chart, the central angle, the arc length of each slice, and the area are directly proportional to the quantity or percentage it represents. Some real-world examples that can be depicted using pie charts include marks obtained by students...
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Bar Graph01:07

Bar Graph

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A bar graph is also called a bar chart and consists of bars that are separated from each other. It either uses horizontal or vertical bars to show comparisons among categories. The bars can be rectangles, or they can be rectangular boxes (used in three-dimensional plots). One axis of the graph represents the specific categories being compared, and the other axis shows a discrete value. In this graph, the length of the bar for each category is proportional to the number or percent of individuals...
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pV-Diagrams01:18

pV-Diagrams

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The pV diagram, which is a graph of pressure versus volume of the gas under study, is helpful in describing certain aspects of the substance. When the substance behaves like an ideal gas, the ideal gas equation describes the relationship between its pressure and volume. On a pV diagram, it is common to plot an isotherm, which is a curve showing p as a function of V with the number of molecules and the temperature fixed. Then, for an ideal gas, the product of the pressure of the gas and its...
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Protein Networks02:26

Protein Networks

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An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
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Non-Canonical Wnt Signaling Pathways01:41

Non-Canonical Wnt Signaling Pathways

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Wnt is a zygotic effect gene that is expressed during very early embryonic development. It regulates various processes in animals starting from early development through the adult stage, such as organogenesis in the embryo and maintenance of neuronal and blood stem cells. Wnt proteins can induce a wide variety of intracellular pathways depending upon the specific abilities of different Wnt ligands to form a complex with shared and cognate receptors in the presence of different co-receptors. The...
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相关实验视频

Updated: Jul 25, 2025

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

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夜:用于蛋白质特征可视化的网络组件.

Gustavo A Salazar1, Aurélien Luciani1, Xavier Watkins1

  • 1Macromolecules, Structure, Chemistry and Bioimaging Section, European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Wellcome Genome Campus, Hinxton, CB10 1SD, UK.

Bioinformatics advances
|June 26, 2023
PubMed
概括
此摘要是机器生成的。

Nightingale提供可重复使用的网络组件,用于可视化生物数据,特别是蛋白质特征和相互作用. 该库通过为研究人员提供灵活,可定制的视图来增强数据探索.

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A Web Tool for Generating High Quality Machine-readable Biological Pathways
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Author Spotlight: In Vivo Whole-Brain Imaging of Zebrafish Larvae Using Three-Dimensional Fluorescence Microscopy
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相关实验视频

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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

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A Web Tool for Generating High Quality Machine-readable Biological Pathways
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Author Spotlight: In Vivo Whole-Brain Imaging of Zebrafish Larvae Using Three-Dimensional Fluorescence Microscopy
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科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 数据可视化 数据可视化

背景情况:

  • 生物数据可视化对于理解复杂的生物系统至关重要.
  • 像树景和基因组浏览器轨迹这样的标志性可视化是必要的研究工具.
  • 有效的可视化有助于解释生物概念和数据模式.

研究的目的:

  • 介绍Nightingale,这是一个可重复使用的网络组件库,用于生物数据可视化.
  • 提供可视化蛋白质序列特征,变异和相互作用数据的工具.
  • 为研究人员提供灵活和可定制的数据视图.

主要方法:

  • 开发一个用于数据可视化的Web组件库.
  • 实现用于显示各种蛋白质相关数据类型的组件.
  • 为灵活性和构成设计,以创建定制的可视化环境.

主要成果:

  • 夜的部件被用于主要的生物信息项目,如UniProt和InterPro.
  • 该库可方便显示各种蛋白质数据,包括序列特征,变体和3D结构.
  • 组件允许在统一的上下文中查看多个数据源,并创建自定义视图.

结论:

  • "夜"提供了一种灵活且可重复使用的解决方案,用于可视化蛋白质数据.
  • 该图书馆通过可定制的Web组件增强生物数据的探索和理解.
  • 奈丁盖尔是免费的,促进在生物信息学研究更广泛的采用.