在胰岛素受体激酶内构造转换的分子模拟揭示了多步激活途径中的共识特征
Kwangho Nam1, Yunwen Tao1, Victor Ovchinnikov2
1Department of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, Texas 76019, United States.
The journal of physical chemistry. B
|June 26, 2023
概括
蛋白激酶活性是由构造变化调节的,特别是在激活循环 (A-循环). A-循环酸化稳定了活性激酶构造,这表明激酶之间存在保留的激活机制.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 蛋白激酶通过结构变化调节细胞活动.
- 激活循环的酸化 (A-循环) 是一个关键的调节机制.
研究的目的:
- 阐明胰岛素受体激酶激活的构造过渡路径和自由能量景观.
- 研究A环酸化对酶构成和活性的影响.
主要方法:
- 字符串方法来确定构造性过渡路径.
- 自由能量扰动模拟以计算酸化的自由能量.
- 对DFG动机,A环和αC螺旋运动的分析.
主要成果:
- 形状变化包括顺序的DFG图案翻转,A循环旋转和αC螺旋运动.
- A-循环形状变化是主要的能量障碍.
- 循环酸化将平衡转移到活性构成,通过限制对非活性状态的访问.
结论:
- 为蛋白质激酶的 conformational 激活提出了一个共识机制.
- A环酸化在稳定活性激酶状态方面发挥着至关重要的作用.
- 了解这些转变对于酶向药物开发至关重要.
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