果马赛克病毒的全球人口结构 (ApMV,Ilarvirus属)
Ali Çelik1,2, Ali Ferhan Morca3, Sevgi Coşkan3
1Department of Plant Protection, Faculty of Agriculture, Bolu Abant İzzet Baysal University, 14030 Bolu, Türkiye.
Viruses
|June 28, 2023
概括
对果马赛克病毒 (ApMV) 基因序列的全球分析揭示了三个不同的血统和重组的证据. 在这些果马赛克病毒 (ApMV) 种群中观察到遗传分离和有限的基因流动.
科学领域:
- 植物病毒学 植物病毒学
- 分子进化是分子进化的过程.
- 生物信息学是一种生物信息学.
背景情况:
- 果马赛克病毒 (ApMV) 是一种影响果作物和其他宿主的重要植物病原体.
- 了解ApMV的遗传多样性和种群结构对于疾病管理和控制战略至关重要.
研究的目的:
- 通过基因序列数据分析ApMV的全球分科和种群结构.
- 调查重组的存在及其对ApMV演变的影响.
主要方法:
- 来自NCBI GenBank的运动蛋白 (MP) 和外套蛋白 (CP) 基因的家族遗传学分析.
- 使用重组检测程序 (RDP v.4.56) 进行重组分析.
- 从土耳其ApMV分离物中对部分MP,基因间区域和CP基因进行测序.
主要成果:
- 对于MP和CP基因来说,它们具有相同的族系,形成三种血统,但与P1和P2基因不同,表明重组.
- 在特定ApMV分离物的P1和P2区域中检测到显著的重组信号.
- 第三组的分离物呈现出较高的分歧;中立性测试表明P1区域的选择是平衡的或收缩的.
- 高固定指数 (FST) 值证实了这三个族群之间的遗传分离和缺乏基因流动.
- 土耳其ApMV分离的果和子分别在1组和3组中聚集在一起.
结论:
- ApMV种群表现出遗传结构和重组的证据,特别是在P1和P2区域.
- 独特的血统和有限的基因流量表明ApMV内部的局部进化和适应.
- 土耳其分离品的遗传学定位有助于了解ApMV的全球分布和遗传多样性.
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