延迟反的随机切换抑制了遗传调节系统中的振荡
Bhargav R Karamched1,2,3, Christopher E Miles4
1Department of Mathematics, Florida State University, Tallahassee, FL 32304, USA.
Journal of the Royal Society, Interface
|June 28, 2023
概括
延迟中的动态随机性可以改变延迟反效应. 一个新的有效延迟方程表明,在系统之间快速切换可以稳定基因调节动态.
科学领域:
- 数学建模的数学建模
- 动态系统理论 动态系统理论
- 随机过程是指随机的过程.
背景情况:
- 延迟和随机性是模拟控制,物理和生物系统的关键.
- 了解延迟中的随机性如何影响反对于准确的系统描述至关重要.
研究的目的:
- 调查延误中的动态随机性对延迟反的影响.
- 为带有切换延迟的混合系统推导出有效的延迟方程.
- 探索基因调节模型中的应用.
主要方法:
- 开发了一种混合模型,将连续时间的马尔科夫链结合起来,用于延迟动力学和系统演变的决定性延迟方程.
- 在快速切换极限中计算出有效延迟方程.
- 分析了一种基因调节模型,使用随机切换延迟反.
主要成果:
- 导出的有效延迟方程捕捉了所有子系统延迟的影响.
- 一个有效的延迟无法取代多个切换延迟的复杂动态.
- 在振荡子系统之间足够快的切换可以导致稳定的系统动态.
结论:
- 显式建模延迟的动态随机性,可以更准确地表示系统的行为.
- 由此得出的有效延迟方程对于理解具有复杂延迟动态的系统至关重要.
- 这种方法为设计稳定的生物系统提供了一条途径,例如基因调节网络.
相关概念视频
Global Regulatory Systems
45
Global regulatory systems in bacteria enable rapid and coordinated responses to environmental changes by integrating sensory inputs with gene expression, ensuring efficient adaptation to fluctuating conditions. Key global regulatory mechanisms include regulons, two-component systems, sigma factors, and secondary messengers.Regulons and Global RegulatorsA regulon is a collection of genes and operons controlled by a common global regulator. These regulators enable bacteria to prioritize resource...
45
Cell Signaling Feedback Loops
6.4K
Positive and negative feedback loops are crucial for regulating biological signaling systems. These feedback loops are processes that connect output signals to their inputs.
Negative feedback loops
Most signaling systems have negative feedback loops that can perform different functions such as output limiter, and adaptation.
Output limiter
Upon receiving an input signal, the cellular response rapidly increases until a threshold is reached. Beyond this threshold, a negative feedback loop...
Negative feedback loops
Most signaling systems have negative feedback loops that can perform different functions such as output limiter, and adaptation.
Output limiter
Upon receiving an input signal, the cellular response rapidly increases until a threshold is reached. Beyond this threshold, a negative feedback loop...
6.4K
Circadian Rhythms and Gene Regulation
4.1K
The biological clock is involved in many aspects of regulating complex physiology in all animals. It was in 1935 when German zoologists, Hans Kalmus and Erwin Bünning, discovered the existence of circadian rhythm in Drosophila melanogaster. However, the internal molecular mechanisms behind the circadian clock remained a mystery until 1984, when Jeffrey C. Hall, Michael Rosbash, and Michael W. Young discovered the expression of the Per gene oscillating over a 24-hour cycle. In subsequent...
4.1K
Feedback Inhibition
54.1K
Biochemical reactions are occurring constantly in cells, converting starting substances to different products, usually with the help of enzymes that speed the reactions. Without enzymes, it would take far too long for most reactions to occur to be useful to the cell!
54.1K
Constitutive and Regulated Gene Expression
48
Gene expression in prokaryotes is governed by constitutive and regulated systems, allowing cells to balance the production of essential proteins with adaptive responses to environmental changes.Constitutive Gene ExpressionConstitutive, or housekeeping, genes are continuously expressed as they encode proteins vital for fundamental cellular processes. These include enzymes for glycolysis, ribosomal components for protein synthesis, and proteins involved in DNA replication. Their constant...
48
Regulation of Expression at Multiple Steps
951
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
951


