通过TransitID对活细胞内和活细胞之间的蛋白质贩运进行动态映射
Wei Qin1, Joleen S Cheah1, Charles Xu2
1Departments of Biology, Genetics, and Chemistry, Stanford University, Stanford, CA 94305, USA.
Cell
|June 29, 2023
概括
通过TransitID可以在活细胞中绘制成千上万种蛋白质的地图. 这种近距离标记方法揭示了以前隐藏的细胞贩运途径和功能,
科学领域:
- 细胞生物学
- 蛋白质组学
- 分子生物学
背景情况:
- 绘制活细胞内源蛋白贩运的地图对于了解细胞机制至关重要.
- 目前的显微镜和质谱等方法对动态蛋白质体交易有规模和分辨率的限制.
研究的目的:
- 开发和验证TransitID,一种用于无偏见地绘制内源性蛋白质贩运的新方法.
- 在生物细胞内识别蛋白质运动时实现纳米空间分辨率.
主要方法:
- TransitID使用两个近距离标记 (PL) 酶,TurboID和APEX,针对特定的细胞区域.
- 小分子基质的顺序添加使得协同PL,然后通过质谱识别双标记蛋白质.
主要成果:
- TransitID成功地绘制了细胞质 - 线粒体,细胞质 - 核和细胞质 - 压力颗粒之间的蛋白质贩运.
- 这项研究揭示了压力颗粒在保护JUN转录因子免受氧化压力的保护作用.
- 发现了巨细胞与癌细胞之间的细胞间信号蛋白.
结论:
- TransitID提供了一种强大,高分辨率的方法来分析活细胞中的内源蛋白贩运.
- 该方法根据细胞区或来源区分蛋白质群体.
- 开辟了以前看不见的细胞生物学和细胞间通信的新途径.
相关概念视频
Protein Dynamics in Living Cells
2.2K
Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
2.2K
Overview of Protein Sorting and Transport
11.6K
Eukaryotic cells have different membrane-bound organelles with distinct protein requirements. The process by which proteins are targeted to a specific organelle is called protein sorting.
Protein sorting can be of two types: signal-based sorting and vesicle-based trafficking. In signal-based sorting, specific amino acid sequences called sorting signals target proteins to the proper location inside the cell either via gated transport or by protein translocation. In gated transport, folded...
Protein sorting can be of two types: signal-based sorting and vesicle-based trafficking. In signal-based sorting, specific amino acid sequences called sorting signals target proteins to the proper location inside the cell either via gated transport or by protein translocation. In gated transport, folded...
11.6K
Translocation of Proteins into the Mitochondria
3.2K
Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
3.2K
Protein Diffusion in the Membrane
4.4K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
4.4K
Protein Transport into the Inner Mitochondrial Membrane
3.8K
Nuclear encoded mitochondrial precursors are imported to the inner membrane in a multistep process involving two separate translocons, TIM22 and TIM23. TIM23 is a cation-selective pore that remains closed by the N terminal segment of the protein. Negative charges on the TIM23 act as a receptor for the incoming precursor, pulling the positively charged matrix-targeting sequence for peptide insertion and translocation.
Transport of mitochondrial precursors across the TIM23 channel is driven by...
Transport of mitochondrial precursors across the TIM23 channel is driven by...
3.8K
Post-translational Translocation of Proteins to the RER
5.8K
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
5.8K


