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相关概念视频

Maximum Size of Aggregate01:12

Maximum Size of Aggregate

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The maximum size of aggregate is defined as the aperture of the sieve retaining 15 percent or more of the particles present in the aggregate sample. The aggregate's maximum size impacts the concrete's water requirement, workability, and strength. Larger aggregates reduce the surface area needing cement paste coverage, which can lower water needs, thereby allowing a decrease in the water-to-cement ratio when the desired workability and richness of the mix are to be maintained, which can...
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Multi-species Conserved Sequences02:51

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Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
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Per-Unit Sequence Models01:26

Per-Unit Sequence Models

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An ideal Y-Y transformer, grounded through neutral impedances, displays per-unit sequence networks akin to those of a single-phase ideal transformer when subjected to balanced positive- or negative-sequence currents. These currents do not produce neutral currents, and their associated voltage drops.
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Evolutionary Relationships through Genome Comparisons02:54

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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
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Survival trees are a non-parametric method used in survival analysis to model the relationship between a set of covariates and the time until an event of interest occurs, often referred to as the "time-to-event" or "survival time." This method is particularly useful when dealing with censored data, where the event has not occurred for some individuals by the end of the study period, or when the exact time of the event is unknown.
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In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
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相关实验视频

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The ITS2 Database
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使用分区聚合的Bloom comb树进行可扩展序列数据库搜索.

Camille Marchet1, Antoine Limasset1

  • 1University of Lille, CNRS, Centrale Lille, UMR 9189 CRIStAL, F-59000 Lille, France.

Bioinformatics (Oxford, England)
|June 30, 2023
PubMed
概括
此摘要是机器生成的。

我们开发了PAC,这是一种用于高效搜索大规模序列数据集的新型数据结构. 对于大型生物序列集合,PAC显著提高了构建时间和查询速度.

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科学领域:

  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学
  • 基因组学就是基因组学.

背景情况:

  • 序列读取档案超过45 petabyte,使得传统的BLAST类搜索无法实现.
  • 现有的基于k-mer的策略和近似的会员查询结构与巨大的数据集作斗争.

研究的目的:

  • 引入PAC,一个新的近似成员查询数据结构,用于查询大序列集合.
  • 在施工时间和查询性能方面证明PAC的效率.

主要方法:

  • PAC使用流媒体方式以最小的磁盘足迹来构建索引.
  • 数据结构是为可扩展查询序列数据集而设计的.

主要成果:

  • 与可比的压缩方法相比,PAC可以在施工时间上提高3-6倍.
  • 索引整个GenBank细菌基因组集合 (3.5TB) 需要一天时间.
  • 在不到一个小时的时间内,查询了50万个转录序列.

结论:

  • PAC是一个高度可扩展和高效的数据结构,用于查询大规模的序列集合.
  • 它代表了生物数据可访问性和分析的重大进展.