经验推导的序列相似度值,用于研究与医疗保健相关的细菌病原体之间共享的等离子体的基因组流行病学
Daniel Evans1, Alexander Sundermann2, Marissa Griffith2
1Department of Infectious Diseases and Microbiology, University of Pittsburgh Graduate School of Public Health, Pittsburgh, PA, USA.
EBioMedicine
|July 1, 2023
概括
全基因组测序揭示了在医院获得的细菌病原体之间频繁的水平等离子体转移. 这项研究追踪了等离子体的运动,有助于了解抗生素耐药性在医疗机构的传播.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 流行病学 流行病学
背景情况:
- 医疗保健相关的细菌病原体通常含有塑体,使其具有抗生素耐药性和毒性.
- 在医院研究水平等离子体转移至关重要,但缺乏开发的基因组和流行病学工具.
研究的目的:
- 通过使用全基因组测序,在一个医院内系统地追踪医院病原体中的等离子体.
- 为了确定具有水平等离子体转移迹象的流行病学联系.
主要方法:
- 从一个大型医院的细菌分离物中观察性研究等离子体.
- 开发了序列相似度值,以推断水平等离子体转移.
- 对89种质粒进行了3074个基因组的选,并审查了地理时间联系的电子健康记录.
主要成果:
- 根据序列相似性,确定了45种可能在临床分离物中循环的等离体.
- 发现了10个高度保存的等离子体与相关的地质时空链接,表明水平转移.
- 观察到具有共享脊椎但具有可变的移动遗传元素含量的等离子体.
结论:
- 在医院内,病房内细菌病原体之间的水平等离子体转移是常见的.
- 全基因组测序和比较基因组学可以有效监测等离子体转移动态.
- 核酸标识和参考序列覆盖是研究等离子体转移的关键.
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