结构揭示了电梯运输器中的同质性
Noah Trebesch1, Emad Tajkhorshid1
1Theoretical and Computational Biophysics Group, NIH Resource for Macromolecular Modeling and Visualization, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign.
bioRxiv : the preprint server for biology
|July 3, 2023
概括
电梯传送器对于细胞膜传输至关重要,在不同家族中被发现是同类的. 这项研究确定了它们的共同进化起源和保存的结构,加深了我们对这种基本生物机制的理解.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 电梯运输器是通过细胞膜进行基质运输的关键机制.
- 以前的分类将电梯运输器分解成不相关的家族,限制了进化背景.
- 了解这些载体的进化历史对于阐明它们的分子功能至关重要.
研究的目的:
- 为了研究电梯运输者之间的进化关系.
- 根据结构和序列分析,建立各种电梯运输机家族的同质性.
- 为电梯运输人员构建一个家族遗传框架.
主要方法:
- 使用蛋白质数据库数据对来自18个家族的62个电梯运输机进行了全面的结构分析.
- 结构相似性,复杂性和序列相似性的定量评估.
- 遗传学树的构建,以可视化进化关系.
主要成果:
- 在18个家族的62个电梯运输器的运输领域中确定了一个保存的10螺旋结构.
- 通过定量结构和序列分析,提供了这些载体同质性的令人信服的证据.
- 开发了一个家族遗传树,详细说明了电梯运输家属之间的进化联系.
结论:
- 来自不同家族的电梯运输器具有共同的进化起源和保存的结构架构.
- 这些发现需要重新评估电梯运输机分类和进化史.
- 这项工作提供了对电梯运输机制及其功能影响的更深入,更细致的理解.
相关概念视频
Protein Translocation Machinery on the ER Membrane
4.7K
The translocon complex situated on the ER membrane is the main gateway for the protein secretory pathway. It facilitates the transport of nascent peptides into the ER lumen and their insertion into the ER membrane.
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the...
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the...
4.7K
Membrane Asymmetry Regulating Transporters
4.6K
Enzymes like flippase, floppase, and scramblase transfer phospholipids from one layer to another in the membrane, thereby affecting membrane asymmetry.
Flippase
Eukaryotic flippases are type-IV P-type ATPases or P4-ATPases belonging to P-type ATPase family proteins that are membrane-bound pumps involved in the ATP-mediated transport of ions and molecules across the membrane. Flippases flip specific phospholipids from the outer to the inner leaflet of a membrane. All P4-ATPases have one...
Flippase
Eukaryotic flippases are type-IV P-type ATPases or P4-ATPases belonging to P-type ATPase family proteins that are membrane-bound pumps involved in the ATP-mediated transport of ions and molecules across the membrane. Flippases flip specific phospholipids from the outer to the inner leaflet of a membrane. All P4-ATPases have one...
4.6K
Overview of Protein Sorting and Transport
11.6K
Eukaryotic cells have different membrane-bound organelles with distinct protein requirements. The process by which proteins are targeted to a specific organelle is called protein sorting.
Protein sorting can be of two types: signal-based sorting and vesicle-based trafficking. In signal-based sorting, specific amino acid sequences called sorting signals target proteins to the proper location inside the cell either via gated transport or by protein translocation. In gated transport, folded...
Protein sorting can be of two types: signal-based sorting and vesicle-based trafficking. In signal-based sorting, specific amino acid sequences called sorting signals target proteins to the proper location inside the cell either via gated transport or by protein translocation. In gated transport, folded...
11.6K
Structure of Porins
3.0K
Mitochondria, chloroplasts, and gram-negative bacteria have transmembrane, beta-barrel proteins called porins to mediate the free diffusion of ions and metabolites across the membrane. Mitochondrial porin precursors contain conserved amino acid sequences called beta signals at their C-terminal. Beta signals have a motif of PoXGXXHyXHy (Po-Polar, X-Any amino acid, G-Glycine, Hy-LargeHydrophobic), which are crucial for precursor recognition to initiate precursor assembly. Beta-barrel...
3.0K
Clathrin Coated Vesicles
7.1K
Clathrin-coated vesicles use endocytosis to transport receptors and lysosomal hydrolases from the Golgi to the lysosome in the late secretory pathway. Clathrin-mediated endocytosis was the first described endocytic process, and Clathrin-coated vesicles remain one of the most well-studied transport vesicles. The molecular machinery that generates clathrin-coated vesicles comprises over 50 proteins that precisely coordinate vesicle formation. Cell surface receptors concentrated in indented sites...
7.1K
The Movement of Organelles and Vesicles
4.6K
In eukaryotic cells, cytoskeletal filaments such as actin, microtubules, and intermediate filaments form a mesh-like cytoskeletal network. These filaments serve as tracks for transporting cellular cargo. Specialized motor proteins use the chemical energy stored in adenosine triphosphate (ATP) for this transport. During interphase, microtubules are polarized, with the plus-end towards the cell periphery and the minus-end towards the cell center. Two microtubule-associated motor proteins,...
4.6K


