了解ATP与DosS催化域的结合,其中具有短ATP-lid
Grant Larson1, Peter Windsor1, Elizabeth Smithwick1
1Department of Chemistry, University of Minnesota, Minneapolis, MN 55455.
bioRxiv : the preprint server for biology
|July 3, 2023
概括
的DosS胺激酶.
科学领域:
- 生物化学 生化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- DosS 是一种血红体传感器胺激酶,对菌根菌的休眠状态至关重要.
- 它的短ATP-lid以前被认为是阻碍ATP结合的.
- 了解DosS的ATP结合机制是控制细菌休眠的关键.
研究的目的:
- 为了研究DosS CA域的ATP结合机制.
- 为了澄清短ATP-lid在DOSS激酶活性中的作用.
- 了解离子对DOSS CA结构和功能的影响.
主要方法:
- 计算建模计算建模
- 在X射线晶体学.
- 生物物理研究 (循环二元论)
- 在AlphaFold建模中使用AlphaFold模型.
主要成果:
- 离子通过与谷氨酸协调,在DOSS CA中诱导一个封闭的盖子形状,导致一个人为的随机卷轴.
- 在没有的情况下,短ATP-lid表现出结构灵活性,并与53±13μM的Kd结合ATP.
- 由于自由的度较低,DosS CA在生理条件下可能会结合ATP.
结论:
- 由于其灵活的ATP-lid,DosS CA在生理条件下结合ATP.
- 研究结果揭示了短ATP-lids在细菌histidine激酶中的形状适应性.
- 提供了适用于具有类似ATP结合域的2988个同源蛋白的见解.
相关概念视频
ATP Synthase: Structure
12.7K
ATP synthase or ATPase is among the most conserved proteins found in bacteria, mammals, and plants. This enzyme can catalyze a forward reaction in response to the electrochemical gradient, producing ATP from ADP and inorganic phosphate. ATP synthase can also work in a reverse direction by hydrolyzing ATP and generating an electrochemical gradient. Different forms of ATP synthases have evolved special features to meet the specific demands of the cell. Based on their specific feature, ATP...
12.7K
ATP Synthase: Mechanism
14.8K
In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased...
14.8K
The ADP/ATP Carrier Protein
3.3K
ADP/ATP carrier or AAC protein is the most abundant carrier protein in the inner mitochondrial membrane. It transports large quantities of ADP and ATP, equivalent to the average human body weight, every day. Among other transporters, ACC protein is one of the best-studied members of the mitochondrial carrier protein family. The ADP/ATP carrier protein comprises two transmembrane helices connected to a loop and a single alpha-helix on the matrix side. It switches between two conformational...
3.3K
Allosteric Proteins-ATCase
5.8K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.8K
ATP Driven Pumps II: P-type Pumps
4.9K
The P-type pumps are a large family of integral membrane transporter ATPases. They are divided into five major types based on substrate specificity, from I to V.
A typical P-type pump has three cytosolic domains: nucleotide-binding (N), phosphorylation (P), and activator (A) domains. These domains are connected to the membrane-spanning helices by short amino acid segments. ATP hydrolysis and covalent phosphoenzyme intermediate formation are crucial parts of the catalytic cycle. At the highly...
A typical P-type pump has three cytosolic domains: nucleotide-binding (N), phosphorylation (P), and activator (A) domains. These domains are connected to the membrane-spanning helices by short amino acid segments. ATP hydrolysis and covalent phosphoenzyme intermediate formation are crucial parts of the catalytic cycle. At the highly...
4.9K
ATP Driven Pumps I: An Overview
8.3K
ATP-driven pumps, also known as transport ATPases, are integral membrane proteins. They have binding sites for ATP located on the membrane's cytosolic side and the ion-conducting domain in the transmembrane region. These pumps use the free energy released from ATP hydrolysis to move the solutes across cell membranes against an electrochemical gradient.
There are four main types of ATP-driven pumps - P-type, V-type, F-type, and ABC transporter. All these pumps are of varying complexities and...
There are four main types of ATP-driven pumps - P-type, V-type, F-type, and ABC transporter. All these pumps are of varying complexities and...
8.3K


