对细菌二烯合成酶的催化性乱交的分子见解
Zhong Li1, Lilan Zhang2, Kangwei Xu3
1State Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, Shandong, 266237, China.
Nature communications
|July 6, 2023
概括
迪特尔合成酶 VenA 从常见的前体构建复杂的分子. 研究人员阐明了它的结构和独特的活性部位,揭示了基质选择性的机制,并使新的烯合成工程成为可能.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 酶学 是一种酶学.
背景情况:
- 迪特尔合成酶是自然产品生物合成中的关键酶.
- 委内瑞拉A组装委内瑞拉A,具有独特的四环结构.
- 维纳表现出基质乱交,接受各种酸盐基质.
研究的目的:
- 为了确定Vena在Apo和Holo形式中的晶体结构.
- 调查Vena非典型活性部位图案的功能和结构基础.
- 阐明基质选择性和催化性乱交背后的机制.
主要方法:
- 进行X射线晶体学以获得高分辨率结构.
- 生物化学测试以评估酶活性和基质特异性.
- 生物信息学分析以确定相关的酶子类.
- 多尺度计算模拟和局部定向的突变发生.
主要成果:
- 晶体结构揭示了Vena与和酸盐的复合体.
- 非典型的115DSFVS120图案在功能上进行了特征化,Ser116和Gln83取代了正规的酸盐.
- 生物信息学发现了一种隐藏的I型微生物合成酶的子类.
- 获得了对基质选择性和乱交的机制性见解.
- 维纳被改造成一个塞斯特烯合成酶.
结论:
- 该研究提供了详细的结构和机制理解Vena.
- 这些发现揭示了合成酶活性位点进化和功能的新方面.
- 维纳工程展示了创造具有改变基底特异性的新型合成酶的潜力.
相关概念视频
Diels–Alder Reaction Forming Bridged Bicyclic Products: Stereochemistry
4.7K
Diels–Alder reactions between cyclic dienes locked in an s-cis configuration and dienophiles yield bridged bicyclic products.
4.7K
Diels–Alder Reaction Forming Cyclic Products: Stereochemistry
3.9K
The Diels–Alder reaction is one of the robust methods for synthesizing unsaturated six-membered rings. The reaction involves a concerted cyclic movement of six π electrons: four π electrons from the diene and two π electrons from the dienophile.
3.9K
Diels–Alder Reaction: Characteristics of Dienophiles
6.1K
In a Diels–Alder reaction, the diene is usually an electron-rich system and acts as a nucleophile, whereas the dienophile is electron-deficient and functions as an electrophile. Much like the diene, the nature of the dienophile significantly impacts the outcome of the reaction.
Characteristics of Dienophiles
Generally, the best dienophiles are alkenes containing electron-withdrawing substituents such as carbonyl, nitrile, and nitro groups. The feasibility of a Diels–Alder reaction depends...
Characteristics of Dienophiles
Generally, the best dienophiles are alkenes containing electron-withdrawing substituents such as carbonyl, nitrile, and nitro groups. The feasibility of a Diels–Alder reaction depends...
6.1K
Diels–Alder Reaction: Characteristics of Dienes
4.2K
The Diels–Alder reaction brings together a diene and a dienophile to form a six-membered ring. Both components have unique characteristics that influence the rate of the reaction.
Characteristics of the diene
Conformation
The simplest example of a diene is 1,3-butadiene, an acyclic conjugated π system. At room temperature, the molecule exists as a mixture of s-cis and s-trans conformers by virtue of rotation around the carbon–carbon single bond. Although the s-trans isomer is...
Characteristics of the diene
Conformation
The simplest example of a diene is 1,3-butadiene, an acyclic conjugated π system. At room temperature, the molecule exists as a mixture of s-cis and s-trans conformers by virtue of rotation around the carbon–carbon single bond. Although the s-trans isomer is...
4.2K
Biosynthesis in Bacteria
41
Biosynthesis in bacteria is a fundamental anabolic process that generates essential macromolecules, including proteins, nucleic acids, lipids, and polysaccharides. These macromolecules are critical for cellular growth, replication, and function. The process is tightly regulated and energetically linked to catabolic pathways to ensure optimal resource utilization.Biosynthetic pathways begin with precursor metabolites such as pyruvate, acetyl-CoA, and glucose-6-phosphate derived from glycolysis,...
41
[4+2] Cycloaddition of Conjugated Dienes: Diels–Alder Reaction
10.3K
The Diels–Alder reaction is an example of a thermal pericyclic reaction between a conjugated diene and an alkene or alkyne, commonly referred to as a dienophile. The reaction involves a concerted movement of six π electrons, four from the diene and two from the dienophile, forming an unsaturated six-membered ring. As a result, these reactions are classified as [4+2] cycloadditions.
10.3K


