G-四重复DNA有助于RNA聚合酶II介导的3D染色体结构
Jun Yuan1, Xiaomei He2, Yinsheng Wang1,2
1Environmental Toxicology Graduate Program, University of California, Riverside, Riverside, CA 92521-0403, USA.
Nucleic acids research
|July 10, 2023
概括
在RNA聚合酶II (RNAPII) 相互作用和基因调节中,DNA瓜四重复合体 (G4s) 是至关重要的. 这项研究揭示了G4s影响RNAPII介导的DNA循环和转录,影响基因表达.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 高阶染色体组织对于生物过程和疾病至关重要.
- 在人类基因组中,瓜四重复 (G4) 结构很普遍,特别是在基因调节区域.
- 在RNA聚合酶II (RNAPII) 中介的长距离DNA相互作用和转录中G4结构的作用仍然不清楚.
研究的目的:
- 研究G4结构对RNAPII介导的长距离DNA相互作用的贡献.
- 阐明G4s在转录调节中的作用.
- 分析G4结构和RNAPII链接的DNA循环之间的相关性.
主要方法:
- 对RNAPII ChIA-PET和BG4 ChIP-seq数据的重叠分析.
- 在接受化剂治疗的HepG2细胞中RNAPII HiChIP-seq.
- RNA测序. 在RNA测序.
主要成果:
- 在RNAPII相关的DNA循环和G4结构之间观察到强烈的正相关性.
- PDS治疗减少了与RNAPII相关的远程DNA接触,特别是那些涉及G4位点的接触.
- PDS调节了与G4结构和RNAPII相关相互作用相关的基因的表达.
结论:
- DNA G4结构在RNAPII相关的DNA循环中发挥着重要作用.
- G4s通过长距离的DNA相互作用参与转录的调节.
- 这些发现突显了G4结构在基因组组织和基因表达中的功能重要性.
相关概念视频
Duplication of Chromatin Structure
5.6K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
5.6K
Nucleosome Remodeling
9.2K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.2K
Chromatin Packaging
16.8K
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
16.8K
The Nucleosome
1.7K
Human DNA is almost two meters long. However, it is compressed inside a tiny nucleus measuring only a few microns in diameter. To make this degree of compaction possible, DNA is organized into several sequential levels so that it can fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
In a chromosome, DNA is wound twice around a protein complex called a histone octamer core, which consists of 8 histone proteins. This...
1.7K
Chromatin Structure Regulates pre-mRNA Processing
7.1K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
7.1K
Chromatin Structure and RNA Splicing
2.7K
2.7K


